Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02174 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATTGGCTCTTCGAGCCAGAATTTGGACAACAGTGTAGTGTCATCGGAGACTAGTGAGGTGGAGAAAACGAAACCCAGAAGCGATCAGAATCTGAACAGCAACGGTGTGTTCAATCATGAACACCAAGAAAAAGTTGTGAACACTTTGTCAGTTGCCAACGGTAATTACGGCTTCAAGGCTCAAATGGGTCAGATGCACGCAAATGGGGTCCAGAATCAGCAGTTGGTGATGAACAATGATGGGTTTGGGATTAATGGGGACAATAGGGGTGAGAGTTTCAAGCGTGACATGAGGGATTTGGAAGAACTCTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCCTTCACTGACAAATAATCATGGCTACTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATACTTCCCAATAATTATGGTAATGCTAACGGGCAGACAAACAGAAGGAGGAAGAATGGCTATAATTCTGGGAAGCGAAAGGTGAATCATAAAGTAGAGATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCACCTGGTTACTGAAGAGCAGCTGGCAGCTCTGTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGCGTGTGTGGGGATCCCAATTCTATTCTTCGGTTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATTTTACCCATTGAGAGTGCTACCTTCAAAGACTGCCATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAATATCGACAAGAAGCTTACTCAAGCAGATGTGAAACACTTCTTTGAATCTGTTTGTGGAGAGGTTCTACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTTGAGTTCACACTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGGTCTCGTGCTCCTCGTACTTCTATGGACTGA 1134 0.4462 MAVAENVGAKIGSSSQNLDNSVVSSETSEVEKTKPRSDQNLNSNGVFNHEHQEKVVNTLSVANGNYGFKAQMGQMHANGVQNQQLVMNNDGFGINGDNRGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNNHGYLAGPNAGFGYTNNFILPNNYGNANGQTNRRRKNGYNSGKRKVNHKVEMEKREEMIRRTVYVSDIDHLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAALNLSGTMLGFYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESVCGEVLRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRTSMD* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02174 377 CDD RRM2_CID8_like 285 366 IPR034825 -
Rops10g02174 377 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
Rops10g02174 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 256 IPR000504 GO:0003723
Rops10g02174 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Rops10g02174 377 MobiDBLite consensus disorder prediction 9 28 - -
Rops10g02174 377 CDD RRM1_CID8_like 190 269 IPR034823 -
Rops10g02174 377 MobiDBLite consensus disorder prediction 37 51 - -
Rops10g02174 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Rops10g02174 377 SMART rrm1_1 290 361 IPR000504 GO:0003723
Rops10g02174 377 SMART rrm1_1 193 263 IPR000504 GO:0003723
Rops10g02174 377 MobiDBLite consensus disorder prediction 1 51 - -
Rops10g02174 377 SUPERFAMILY RNA-binding domain, RBD 280 371 IPR035979 GO:0003676
Rops10g02174 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
Rops10g02174 377 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 112 370 - -
Rops10g02174 377 FunFam Polyadenylate-binding protein-interacting protein 10 283 361 - -
Rops10g02174 377 FunFam Polyadenylate-binding protein-interacting protein 11 155 269 - -
Rops10g02174 377 SUPERFAMILY RNA-binding domain, RBD 169 268 IPR035979 GO:0003676
Rops10g02174 377 Gene3D - 153 269 IPR012677 -
Rops10g02174 377 Gene3D - 276 373 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02174 Rops-Chr10 39127961 39134648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02174 191 353 Eukaryotic Initiation Factors Gene Family AT1G34140 26.347 1.88e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02174 - - gmx:106794116 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02174 10 39127961 39134648 Rops10g02174 10 39127961 39134648 ECH