Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02173 ATGTCACAGCCAAGACAAAACAAGATGATGAGTCCAAACGTTGCCAAACAAGGTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGATTAGCATGGGAGACTAAGAGAGACACTCTGAAACGTTATTTTGATCAGTTTGGGGAAATCTTAGAAGCTGTTGTCATCACTGAAAGAAACACTGGAAGATCAAAAGGATATGGCTTTGTGACCTTCAAGGACGCAAATTCTGCGACAATAGCTTGCCAGAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAACCTTGCTGCTCTGGGTGCACAAAAATCTGATCCATCTAAAACAGATGTTTTAGGAAGGCAGAAAATTAGTAGCCCTTCTTGGAATACGGTACCGATCCAATTTCAAGGCACCCCTACTTATTATAATCAGCACATACCCCAGTATACATTTCCCTATCCAGCCTATAGGTATCCTGGTTATCCTTCCCCACAAGACATTTATGAAATGAACTACTATAATGTATATGGTGGACAGCAGCTTCCATTTCGCTGGTTGCCAGCATATTGCCAACCATTTTATGGCCTTAGTAGACAGTTTGTTCCAACAGCACATGTGAAAAAGACACAATTCTCTGACATGTCACCTCAGGAGTTCACAGTTGTTGGCTTATCAGAACCTATTTCGGCTTCACCTTCAATCTCCAGCACTGGATTAGTCACAGGAACAGTAGCTGCAACAGGAATCCTAGGATCCCCTCGAGAACAGAAATCTTCATCTTAA 771 0.4215 MSQPRQNKMMSPNVAKQGGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITERNTGRSKGYGFVTFKDANSATIACQNPYPVIDGRRANCNLAALGAQKSDPSKTDVLGRQKISSPSWNTVPIQFQGTPTYYNQHIPQYTFPYPAYRYPGYPSPQDIYEMNYYNVYGGQQLPFRWLPAYCQPFYGLSRQFVPTAHVKKTQFSDMSPQEFTVVGLSEPISASPSISSTGLVTGTVAATGILGSPREQKSSS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02173 256 Gene3D - 1 114 IPR012677 -
Rops10g02173 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Rops10g02173 256 PANTHER BOULE-RELATED 9 213 - -
Rops10g02173 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Rops10g02173 256 SMART rrm1_1 25 97 IPR000504 GO:0003723
Rops10g02173 256 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Rops10g02173 256 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02173 Rops-Chr10 39118581 39120463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02173 8 157 C2H2 Transcription Factor Family AT2G19380 27.976 7.77e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02173 - - gmx:100788634 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02173 10 39118581 39120463 Rops10g02173 10 39118581 39120463 ECH