Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02169 ATGATGATTCCCAGACAACTTATTTTGCTTCTGTGTTTCCTACTTCATAATTTTCATGGCATCATATGTCAAGATGACACAGATAGAGATGTCCTTCTTTCCTTCAAATTCCAAGTGAGTGACCCAGAAAGTTCTCTATCTGGGTGGTCTGCAGATTCCAATCACTGCACTTGGTATGGTGTCACATGCTCCAAAGTTGGAAACAGTAGCAGAGTCCAATCCCTCACCTTACCAGGACTTGACCTCTCGGGTAAACTACCCCCTCAGCTCTCCAACCTCACTTACCTACGTTCCCTTAACCTTTCAGAAAACAAATTCCATGGCCAAATTCCCCCAGAGTTTGGACATCTCTCACTTCTTAATTTCATTAGCTTAGCTTTCAACAATCTCAGTGGTACACTTCCAGAACAGTTGGGCAAGCTGCATGCTCTACAAAGTTTAGACTTTTCTGTCAATAATCTCACAGGTAAAGTCCCTTCAACATTTGGCAATCTCTTGTCTCTTAAGTTTCTTGCCTTGGCAAGGAACGGGTTCATGGGTGAGATCCCAAGTGAACTGAGTAATCTCAGCAATCTTTCCAAACTTCAACTCACAGTAAACAATTTAACTGGTGAGTTTCCCACTTCTATATTCAACATGTCTTCGTTAGTCTTCTTATCCGTGACAGAGAACAATCTGTCAGGCAAGTTGCCACAAAATTTGGGCCACGCCCTTCCAAATTTAAGGGAACTCTATCTGTCAACCAATAGGTTTGAAGGGTTAATTCCTAACTCCATATCCAATGCCTCGCTTCTTCAACGTATTGATCTTGCTAACAATAATTTTCATGGGCCCATACCTATATTCAACAACTTGAAAAATCTTACCCACCTGATACTTGGTAATAATTATCTTTCTTCCACGACCTCATTGAATTTTCAGTTCTTTGATTCCCTTAGAAACTCCACAAAGTTGCAAATTCTCATGATCAATGGTAACAATTTGACTGGGGAACTTCCAAGATCTGTTGCCAATCTCTCTAGCAATCTCCAACAATTCTGTGTTTCTGATAATAGGTTAACTGGCAAAATTCCTCAAGGAATGAAGAAATTTCAAAATCTTGTATCCTTGTCTTTTGAAAACAATTATTTCACTGGAGAGATGCCATCAGAAATAGGGGCTCTAAATAAGCTGGAGCAGCTTATGATATTCAACAATAGATTGTCTGGAGAAATTCCAGACATTTTTGGCAATTTTACAAATCTGTTTGCTCTTGCATTGGAAAATAACCAATTCTCTGGTAGAATTCACCCAAGTATTGGACAATGCAAAAGATTGACTTTACTTCACCTGGGAAAGAATAGGCTTGGTGGGACCATACCAAAGGAGATATTTCAACTTTCTGGCTTAACAACCTTGTACTTAACGGGAAACTCTCTGCATGGTTCGATTCCTCCCGAGGTCAACACCATGAAGCAGCTTGAGATCATGGCTATTTCCGACAACCAGTTGTCAGGGTACATTCCTAAGGAAATTGATGGCTGTTCTAGCTTGAGGTCAATTTTGATGGCAAGAAACAAATTCAGTGGCTCAATCCCAGATAGTATAGGGGATTTAGCATCCCTTGAGACTTTAGATCTATCATCAAACAATCTCAGTGGCCCAATTCCTGAAAGTTTGGAAAAGCTGGAGTACCTGGTGAGATTAAATTTGTCTTTCAACCATTTGGAAGGGGTGGTTCCTACAAAAGGTGTTTTTATGAACCTTAGCCAGGTTGACCTCCGAGGTAGCAACAAATTGTGTGGCCTTAACGATGAAATTGTGCAGAAATTGGGAGTCTCCCGCTGTGTTGCAAGTAAAAAGAAGAGAAACTTTTTACTCCCTATCATACTTGGAGTTACAGGTGCTACTGCTTTGTTCATTTCAATGCTCTATCTACTGTGGATGATGATGTCTCGAAAGAACAAACATAAGGTGGGGAAAGAAACCAGTTTTTATTCTGCCGCTCTCAGGGGATTGCCTCAAAATATATCATATGGTGATATTCGGCTTGCTACGAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGCTCTGGCACTGTTTATAAGGGTGTGTTCAGCATCAGGACTGGTGAAACCATCACCCTTGCTGTCAAAGTCCTGGACTTGAAACAAAGCAAAGCTTCTAAGAGTTTCAATGCGGAATGTGAAGCTTTAAAAAATGTTAGGCATCGGAATCTAGTGAAGGTTGTCACTTCTTGCTCCAGCGTTGACTATAATGGAAACGACTTTAAGGCCATTGTCATGCAATTCATGCCCTATGGTAATTTGGAAATGAGTTTATACCCGAAAGATGATGAGTCAGGTTCCCCTCTAACCCTGTTGCAAAGATTAAACATTGCCACTGATGTTGCTTCTGCCATGGACTACTTGCACCATGACTGTGACCCACCGATAGCCCATTGTGATCTGAACCCGGTCAATGTCCTACTTGACGAAAATATGGTTGCACATGTCTCGGATTTCGGATTGGCGAGGTTTCTTTCTCAAAATCCATCAGATAAACAGATTAGCACTCTGGAACTAAAGGGAGCAATTGGATATATTGCACCAGAATATGGTCTAGGCGGCAAAGTTTCAACTAGTGGTGATGTCTACAGTTTTGGGATCCTACTGCTTGAGATGGTCACAGGAAAGAAACCAACTGATGAAATGTTTTGGGAAGGATTAAGCCTAAACAAATTTGTCTCGGCCATGGAGGATAATCAAGTACTGACGGTTGCTGATCCAAGCCTTATTGACGACTATGAATGTTGGACACAAAGCTCAACCAGTGATTCTCATAGCGGTGACACAAATTGGATGCGCAAAGCTGTGGAGTGCATAGCTGCTGTTATAAGAGTTGGGTTGTCTTGTACTGCTCATCAGCCCAAAGATCGATGGACCATGAGAGAGGCCTCAACAAAATTGCAAGGAATTAGACAATCCTACCTGGCCTTCTGA 2988 0.414 MMIPRQLILLLCFLLHNFHGIICQDDTDRDVLLSFKFQVSDPESSLSGWSADSNHCTWYGVTCSKVGNSSRVQSLTLPGLDLSGKLPPQLSNLTYLRSLNLSENKFHGQIPPEFGHLSLLNFISLAFNNLSGTLPEQLGKLHALQSLDFSVNNLTGKVPSTFGNLLSLKFLALARNGFMGEIPSELSNLSNLSKLQLTVNNLTGEFPTSIFNMSSLVFLSVTENNLSGKLPQNLGHALPNLRELYLSTNRFEGLIPNSISNASLLQRIDLANNNFHGPIPIFNNLKNLTHLILGNNYLSSTTSLNFQFFDSLRNSTKLQILMINGNNLTGELPRSVANLSSNLQQFCVSDNRLTGKIPQGMKKFQNLVSLSFENNYFTGEMPSEIGALNKLEQLMIFNNRLSGEIPDIFGNFTNLFALALENNQFSGRIHPSIGQCKRLTLLHLGKNRLGGTIPKEIFQLSGLTTLYLTGNSLHGSIPPEVNTMKQLEIMAISDNQLSGYIPKEIDGCSSLRSILMARNKFSGSIPDSIGDLASLETLDLSSNNLSGPIPESLEKLEYLVRLNLSFNHLEGVVPTKGVFMNLSQVDLRGSNKLCGLNDEIVQKLGVSRCVASKKKRNFLLPIILGVTGATALFISMLYLLWMMMSRKNKHKVGKETSFYSAALRGLPQNISYGDIRLATNNFAAENLIGKGGSGTVYKGVFSIRTGETITLAVKVLDLKQSKASKSFNAECEALKNVRHRNLVKVVTSCSSVDYNGNDFKAIVMQFMPYGNLEMSLYPKDDESGSPLTLLQRLNIATDVASAMDYLHHDCDPPIAHCDLNPVNVLLDENMVAHVSDFGLARFLSQNPSDKQISTLELKGAIGYIAPEYGLGGKVSTSGDVYSFGILLLEMVTGKKPTDEMFWEGLSLNKFVSAMEDNQVLTVADPSLIDDYECWTQSSTSDSHSGDTNWMRKAVECIAAVIRVGLSCTAHQPKDRWTMREASTKLQGIRQSYLAF* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02169 995 SUPERFAMILY L domain-like 26 312 - -
Rops10g02169 995 Gene3D Ribonuclease Inhibitor 176 281 IPR032675 -
Rops10g02169 995 ProSitePatterns Protein kinases ATP-binding region signature. 688 714 IPR017441 GO:0005524
Rops10g02169 995 Gene3D Ribonuclease Inhibitor 24 175 IPR032675 -
Rops10g02169 995 Pfam Protein tyrosine and serine/threonine kinase 685 981 IPR001245 GO:0004672|GO:0006468
Rops10g02169 995 Gene3D Phosphorylase Kinase; domain 1 664 766 - -
Rops10g02169 995 FunFam Inactive leucine-rich repeat receptor-like protein kinase 313 603 - -
Rops10g02169 995 ProSiteProfiles Leucine-rich repeat profile. 287 308 IPR001611 GO:0005515
Rops10g02169 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 767 994 - -
Rops10g02169 995 FunFam LRR receptor-like serine/threonine-protein kinase EFR 654 766 - -
Rops10g02169 995 SUPERFAMILY L domain-like 341 597 - -
Rops10g02169 995 ProSiteProfiles Leucine-rich repeat profile. 534 557 IPR001611 GO:0005515
Rops10g02169 995 Pfam Leucine rich repeat 519 569 IPR001611 GO:0005515
Rops10g02169 995 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Rops10g02169 995 Gene3D Transferase(Phosphotransferase) domain 1 767 993 - -
Rops10g02169 995 PANTHER OS04G0122200 PROTEIN 60 187 - -
Rops10g02169 995 SMART LRR_typ_2 412 436 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 556 581 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 238 261 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 189 213 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 93 116 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 285 311 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 532 555 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 388 411 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 460 484 IPR003591 -
Rops10g02169 995 SMART LRR_typ_2 141 164 IPR003591 -
Rops10g02169 995 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 65 312 - -
Rops10g02169 995 Pfam Leucine Rich Repeat 240 261 IPR001611 GO:0005515
Rops10g02169 995 Gene3D Ribonuclease Inhibitor 282 616 IPR032675 -
Rops10g02169 995 ProSiteProfiles Protein kinase domain profile. 682 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02169 995 SUPERFAMILY Protein kinase-like (PK-like) 662 984 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02169 Rops-Chr10 39048419 39051509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02169 19 993 Receptor kinase-like Gene Family AT3G47570 41.511 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops10g02169 PK_Tyr_Ser-Thr 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02169 - - gmx:100776054 1418.68