Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02167 ATGGGTGAATTTGGCGTTTCAGACAAGGAAGCTATAAAAAAAACCAGCACCAGCACCAACAACAACAACAACAACAACATTGCTAGTAGTATTCTTGGGTTGAGTGGGAAGGTGCAGAGCCTTGAAGCATTCCCTAATAAGATGACGATGATGGTGCATCATAATCATCACCACCGTCCAATGTCACCCTTTGATAATGATTCCTTTGCTGGTGATGGTGATGGTCCCACTACTTACATGTCTTTTACTAATCATATAAGCCTTGTTAGTGGTTCTTCTGCTCTTGGTGCTGCCATTGATGGTGGCGGTGCTTCTGCTGTAATAAGACCTTTGCAGCCTTTTGACATTTCTGCTTATACTCCTGCTACCACCACCACCTTCAAATCCCCAGCAGGTGGGATGGCGGCTTCATTGGGGTTTCCTTTCACAAGTGCACAATGGAAGGAACTTGAAAGACAAGCTATGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCTGAACTCCTCGTCACTACTTCAGTCACACCCACTTCTCACTCTCCCTTGGATGGTGGTTTTAATCTGAGGTTGTCAAGCAACACTGATCCAGAGCCAGGTAGGTGCAAGAGAACAGATGGTAAAAAATGGAGATGTTCCAGAGATGTGGCACCTAACCACAAGTATTGTGAGCGCCATATGCATAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTCAGACCAATACCAACAATAATCACCAAATCAAGAAGCCTCGCCATGACTGTAATCCTACTTTTCCTACACCTGATGTTGCTACTGTGGCTTTTGGTAACCCCACAACCAGAAAAGATGGATCTTCATCCCATTTTCTTGCCTCTACTATCAGTCAGCCATACCTTGAAGCTTCGCTTTCTCTTGATAACTTTGGTGTTAAAGCTGCAAATTTTCACTCTGTGCCTTCTGTTTCTTCAAATAAGGAGCCCAGGGGCTTGGAGTGGATGCTGAATGGAGATCCTATTTCCCTGGGTGCTTCTGACTCAGAATGGCACTCTCTGATGCATGACAAAGTTGAAAGGTCCACTGAGGGTTCCTGTAATAACACCAACACCCAGTATCTGAATTCATTTGCATTGTATAGTCCTGGATTGGATCAACTGGACAGACGCCCCTCTCTGTTCCTTAACCCTGTTGTTGTTCCCACAGAAAATCTCCAATCCCAGAAACCAAGGGGTTTCATTGATGCTTGGTCTAATGCAGAAACAGGGGAAAGCAATGCCAACACCAACAAGAAGAGCTCTGCTGCATCATCAATAGGTAAATTGGCCCTTTCTTCTCTTGATCTATCAATGGGGGGTGGTACTGTGGATGAAGGCATTGGAACTACTGGAATGGGTTTAGGACTATTAGAGCCTGATGGAAACACACACAACGATACTAGAATATCTCTCTCAAATTGGCTCAACCCAGCACCTTGGGTGGCTTCTTCAACACCTGGGGGTCCACTAGCTGAAGTTCTAAGGCCAAGCACTGTTACTGCTACCAGTGATGCAACCTCCAATCCATCTTCACCAGTCATAACACATGTTGAATCTAGCAGCACTCCAAGAACAATGGTATCATCTCCATCTGGGGTTTTGCACAAAACTCTTGCTTCATTTTCTGATAGTAGTGGAAATAGCAGCCCAACTGTTGCATCTTCAAGGGCCAATTCTGAGATTGCCTTGCTCAAGTTCAATCATATGTAA 1734 0.4504 MGEFGVSDKEAIKKTSTSTNNNNNNNIASSILGLSGKVQSLEAFPNKMTMMVHHNHHHRPMSPFDNDSFAGDGDGPTTYMSFTNHISLVSGSSALGAAIDGGGASAVIRPLQPFDISAYTPATTTTFKSPAGGMAASLGFPFTSAQWKELERQAMIYKYMMASVPVPPELLVTTSVTPTSHSPLDGGFNLRLSSNTDPEPGRCKRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVQTNTNNNHQIKKPRHDCNPTFPTPDVATVAFGNPTTRKDGSSSHFLASTISQPYLEASLSLDNFGVKAANFHSVPSVSSNKEPRGLEWMLNGDPISLGASDSEWHSLMHDKVERSTEGSCNNTNTQYLNSFALYSPGLDQLDRRPSLFLNPVVVPTENLQSQKPRGFIDAWSNAETGESNANTNKKSSAASSIGKLALSSLDLSMGGGTVDEGIGTTGMGLGLLEPDGNTHNDTRISLSNWLNPAPWVASSTPGGPLAEVLRPSTVTATSDATSNPSSPVITHVESSSTPRTMVSSPSGVLHKTLASFSDSSGNSSPTVASSRANSEIALLKFNHM* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02167 577 MobiDBLite consensus disorder prediction 11 25 - -
Rops10g02167 577 Pfam WRC 198 240 IPR014977 -
Rops10g02167 577 PANTHER GROWTH-REGULATING FACTOR 5 121 432 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops10g02167 577 SMART QLQ_2 140 176 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops10g02167 577 MobiDBLite consensus disorder prediction 177 196 - -
Rops10g02167 577 ProSiteProfiles WRC domain profile. 197 241 IPR014977 -
Rops10g02167 577 Pfam QLQ 141 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops10g02167 577 MobiDBLite consensus disorder prediction 1 25 - -
Rops10g02167 577 ProSiteProfiles QLQ domain profile. 141 176 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops10g02167 577 MobiDBLite consensus disorder prediction 507 538 - -
Rops10g02167 577 MobiDBLite consensus disorder prediction 177 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02167 Rops-Chr10 39042004 39044779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02167 134 502 GRF Transcription Factor Family AT4G24150 33.933 3.31e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops10g02167 WRC 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02167 - - gmx:100803096 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02167 10 39042004 39044779 Rops10g02167 10 39042004 39044779 ECH