Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02163 ATGGGTCATTGTTGCAGCAAAAACATTGCCGTCAACAACGAAACCGTCGCCGCCGATCAAGACCACAAGGCGCCTAATCACGTACCATCGCCGGCGGTTCCCGCCGGAAACTCAGTCTCCGGCGTCAGCGATGCGACTCCTGGCAGGTACACTCCGGCGACCTCGTTCTCCACCAGTCCCTTCACAAGTCCTCTACCTCCCGGCGTGGCGCCGTCGCCGGCGAGAACCCCAGGAAGGAAGTTCCGGTGGCCTCTGCCGCCTCCATCTCCGGCGAAGCCGATCATGGCGGCGTTGCTGCGGCGGCAGGGGAAGGCGAAACCGAAGGATGGACCCATACCGGAGGAGCAAGGAGAAGGTGGTGAAGGAGAGAGGTCTTTGGATAAGAGCTTTGGTTATGGAAAGAATTTTGGGGCAAAGTTTGAGCTTGGGAAGGAAGTGGGTCGTGGACATTTTGGTCACACTTGTTGGGCTAAAGGGAAGAAGGGTGAACTCAAAGGACAATCAGTGGCTGTGAAAATCATTTCCAAAGCTAAGATGACTTCAGCAATATCAATTGAAGATGTAAGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACATAGGAACTTGGTCAAATTTTATGATGCATTTGAGGATGTCAATAACGTCTACATAGTGATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGGATTCTAGATAGAGGTGGAAGATACACAGAGGAGGATGCTAAGGCTATTCTTGTACAAATTCTAGATGTAGTTGCCTTTTGTCATCTTCAAGGAGTTGTTCATCGTGATCTGAAACCAGAGAATTTTCTTTTTGTCTCAAAAGAGGAGGATGCTGTGATGAAAGTTATTGATTTTGGTCTATCTGATTTTGTTAGGCCAGATCAACGCCTCAATGATATTGTTGGAAGTGCCTACTACGTGGCACCTGAGGTGCTCCATAGATCCTACAGTGTTGAAGCAGACTTATGGAGTGTTGGAGTTATATCATACATATTGTTATGCGGAAGTAGACCATTTTGGGCACGGACTGAATCAGGAATCTTTCGGTCTGTGTTAAGAGCGAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTTTTGAACAAGGACCACAGGAAAAGGATGACTGCTGCTCAAGCTCTAGCTCACCCATGGTTGAGAAATGAAAAAATTGCTATTCCTTTAGATATTTTGATTTACAAGTTAGCCAAGTCATATGTGCGTGCCTCACCTTTGAAACGTGCAGCATTGAAGGCTCTCTCGAAAGCATTGACAGAAGAAGAACTTATCTACCTCAGAGTGCAGTTCAACCTCTTGGAACCTAAAGATGGTTGTGTTTCACTCGAGAATTTTAGAGTTGCTCTTATGAAAAATGCAACTGATGCCATGAAAGAAATAAGGGTCCCTGACATTTTAAATTTGATGGAGCCACTCTCCTATAAAAAAATGGACTTCGAAGAGTTCTGCGCTGCTGCAATCAGTGTATACCAGCTGGAAGTTCATCCAGAATGGGATAGAATTACTACCACAGCGTATGAGTATTTTGAGGAGACAGGAAACCGAGTCATTTCAGTTGAGGAGTTAGCACAGGAGATGAATTTGGGTCCTTCAGCATACTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTGGGATATACAAAGTTTTTGCATGGTGTCACAATTCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA 1785 0.4538 MGHCCSKNIAVNNETVAADQDHKAPNHVPSPAVPAGNSVSGVSDATPGRYTPATSFSTSPFTSPLPPGVAPSPARTPGRKFRWPLPPPSPAKPIMAALLRRQGKAKPKDGPIPEEQGEGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAISIEDVRREVKMLKALSGHRNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYTEEDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKEEDAVMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEADLWSVGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKIAIPLDILIYKLAKSYVRASPLKRAALKALSKALTEEELIYLRVQFNLLEPKDGCVSLENFRVALMKNATDAMKEIRVPDILNLMEPLSYKKMDFEEFCAAAISVYQLEVHPEWDRITTTAYEYFEETGNRVISVEELAQEMNLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTIRSSNTRHRQLV* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02163 594 FunFam CDPK-related kinase 3 132 304 - -
Rops10g02163 594 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Rops10g02163 594 ProSiteProfiles Protein kinase domain profile. 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02163 594 MobiDBLite consensus disorder prediction 36 63 - -
Rops10g02163 594 FunFam CDPK-related kinase 1 133 228 - -
Rops10g02163 594 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02163 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 564 - -
Rops10g02163 594 FunFam Calcium-dependent protein kinase SK5 312 407 - -
Rops10g02163 594 MobiDBLite consensus disorder prediction 102 128 - -
Rops10g02163 594 SUPERFAMILY Protein kinase-like (PK-like) 139 423 IPR011009 -
Rops10g02163 594 Gene3D - 423 550 - -
Rops10g02163 594 Gene3D Transferase(Phosphotransferase) domain 1 230 422 - -
Rops10g02163 594 Gene3D - 441 509 - -
Rops10g02163 594 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Rops10g02163 594 MobiDBLite consensus disorder prediction 16 90 - -
Rops10g02163 594 SUPERFAMILY EF-hand 435 579 IPR011992 -
Rops10g02163 594 CDD STKc_CAMK 139 401 - -
Rops10g02163 594 SMART serkin_6 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02163 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Rops10g02163 594 FunFam CDPK-related kinase 1 438 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02163 Rops-Chr10 38984294 38990684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02163 1 585 EF-hand Containing Proteins AT3G50530 57.656 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops10g02163 Pkinase 3.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02163 - - var:108331904 1055.05