Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02159 ATGATGGATGAAGATGAGAATATTCAAGTATCAAAAGGAAAAAAGGTTGAAAGCTTCACCTGCTTAGAGCCACCTCAAAATCCAAGGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTTAGTGATGAGCAAATTAGATCACTAGAATGCATATTTGAGTCAGAATCAAAGCTGGAGCCAAGGAAGAAGGTGCAACTAGCAAGAGATCTCGGGTTGCAGCCTCGCCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACTGATAGAGCAAGAATACAGGAAACTCAAAGATGAATATGACAATTTAGCATCTCGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTACAATTAGAGTTGCAGAAGCTAAATTACTTGATGGAAACATCTCACGATGGTAAAAGGGAAGGAAAAGTTGCCAAGGAATATAGCACGGAAGGTGATGGTTCAGGCAGTGGATACAGCAATTGCAGGGTTGAAACAAAGTCAAGGCTTTCAAATGAGGGTTTGAAGGACAGAGTAGCTGTGTATTCAAATGATCAAAATGAAAAGAGTAGAAGGACTGAGAAATCTGAGGACAGAGGACACCAAGTTCAGAGAATGGATGATCATGCAGAGATTCCATTGGCATCGCTTGAAAAATGGTACAGTGTGGACCCAAGTGGTATCTTAGACCAGTCATGCAGCAGTTCACAATGGTTAGATTTCTGGACTTGA 735 0.4068 MMDEDENIQVSKGKKVESFTCLEPPQNPRKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKVQLARDLGLQPRQVAIWFQNRRARWKSKLIEQEYRKLKDEYDNLASRFESLKKEKESLQLELQKLNYLMETSHDGKREGKVAKEYSTEGDGSGSGYSNCRVETKSRLSNEGLKDRVAVYSNDQNEKSRRTEKSEDRGHQVQRMDDHAEIPLASLEKWYSVDPSGILDQSCSSSQWLDFWT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02159 244 Pfam Homeobox associated leucine zipper 94 133 IPR003106 GO:0006355|GO:0043565
Rops10g02159 244 MobiDBLite consensus disorder prediction 183 210 - -
Rops10g02159 244 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Rops10g02159 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 198 IPR045224 GO:0003700
Rops10g02159 244 MobiDBLite consensus disorder prediction 1 39 - -
Rops10g02159 244 MobiDBLite consensus disorder prediction 140 163 - -
Rops10g02159 244 SUPERFAMILY Homeodomain-like 24 91 IPR009057 -
Rops10g02159 244 Gene3D - 36 97 - -
Rops10g02159 244 Coils Coil 84 132 - -
Rops10g02159 244 FunFam Homeobox-leucine zipper protein ATHB-7 16 92 - -
Rops10g02159 244 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Rops10g02159 244 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Rops10g02159 244 CDD homeodomain 38 92 IPR001356 GO:0003677
Rops10g02159 244 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Rops10g02159 244 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Rops10g02159 244 SMART HOX_1 35 96 IPR001356 GO:0003677
Rops10g02159 244 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02159 Rops-Chr10 38933568 38934985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02159 29 244 Homeobox Transcription Factor Family AT2G46680 40.496 2.50e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops10g02159 Homeodomain 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02159 K09338 - gmx:100499926 361.303