Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02149 ATGAGGAAGAAAAGAATGGAGGGTTCATCCGAAACGAAGTTCCTGCAAGAACTGTTGTTGTACGCGGCGAGCGCGGCGTTGAGTTGCTTGGTATTGTTCGTGGGGCTCCGACACCTTGACCCGAACCGTGAGGCATCGAAGAAGGCTCTTGAACATAAGAAACAGATTGCCAAGCGTCTGGGTCGTCCTCTTATTCAGACCAACCCTTACGAGGATGTCATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTTTGAAAAGACCTGACTTGTTTTCGTATGGTAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCCCCAGGAACTGGAAAAACCATGCTTGCGAAAGCTATAGCTAAGGAGTCGGGTGCAGTTTTCATTAATGTGAGGATATCAAATCTGATGAGCAAATGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCTGTATTTAGCTTGGCTTATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTTGACAGTTTTTTGGGTCAGCGTCGTACGACAGATCATGAGGCATTGTTAAACATGAAAACTGAGTTCATGGCTCTGTGGGATGGTTTTACCACAGATCAGAATGCTCGAGTTATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTCGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGATCAGAGGGAGAGGGCTGAGATCTTGAAGGTTATCGTAAAGGGTGAAAGGGTTGAAGACAACATAGACTTTGGTTATGTAGCTGGCTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCTGCCTATTTTCCTATTAGAGAACTACTGGATGATGAGAAGAAAGGGAAACGATCTCCTGGGCCTAGACCTTTGTCGCAGTTAGATTTGGAGAAGGCCCTTGCCACTTCACGGAAGACAAAGGTTGCTGCAAGTGAATTCGGGGGAATAAGCATACAGTCACCAACAGTGTCTGGTGAGTCAGGTGATTATCAGCTTCAAGCTGCAATCAATGAATTCTCTAAGCATGTTGTTGCTCACATGATTAACCTCCAATCAGATGCCCAGGATCCTTAA 1185 0.454 MRKKRMEGSSETKFLQELLLYAASAALSCLVLFVGLRHLDPNREASKKALEHKKQIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAEILKVIVKGERVEDNIDFGYVAGLCEGYTGSDLFDLCKKAAYFPIRELLDDEKKGKRSPGPRPLSQLDLEKALATSRKTKVAASEFGGISIQSPTVSGESGDYQLQAAINEFSKHVVAHMINLQSDAQDP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02149 394 Pfam AAA+ lid domain 279 314 IPR041569 -
Rops10g02149 394 Gene3D - 85 343 IPR027417 -
Rops10g02149 394 CDD RecA-like_ATAD1 90 255 - -
Rops10g02149 394 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 49 353 - -
Rops10g02149 394 FunFam ATPase family AAA domain-containing protein 1 85 262 - -
Rops10g02149 394 ProSitePatterns AAA-protein family signature. 229 248 IPR003960 GO:0005524|GO:0016887
Rops10g02149 394 Gene3D - 258 340 - -
Rops10g02149 394 Pfam ATPase family associated with various cellular activities (AAA) 127 256 IPR003959 GO:0005524|GO:0016887
Rops10g02149 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 314 IPR027417 -
Rops10g02149 394 SMART AAA_5 123 259 IPR003593 GO:0016887
Rops10g02149 394 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02149 Rops-Chr10 38825509 38831859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02149 44 323 Calmodulin-binding Proteins AT3G56690 32.042 7.51e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02149 K22530 - gmx:100796908 695.656