Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02140 ATGTTGGATGCTGAGTACCAAACAGCTGCAACAGATGAGGAAATCTTAGAAAAAATTGAGACAACAATACAAGAGGGAAATGCTGATCGGTCAAAGGCAAATCAGTTGCTAGCTAGTATTGCAGATGCTGTTGGGGTCTCCACAGAACATGCTGCTTTGAAGAGAGAATTTGAAGAGCCGAGAAGTGAAATGGAAAATGCCAAGTCTGAGCTAGATATGGCTGAAGCTCTACAAATGGAGCAGATTGTAGCAGTACTCGAAAAGGCTGATTCCATAGCTTCAGTGCAAGAGAAGGAAAATAAGTATTTTGAAAAGAGAGATTCTTTGGGAAGGATACCATTGATGCCTCTGCAATCGTTTTACTGCCCAATCTCCCTTGATATTATGGTGGATCCTGTGGAAACTTCTTCTGGTAAGACATTTGAAAGAAGTGAAATAGAGAAATGGTTTGCTGAAGGGAACAATAGCTGTCCCTTGACCAAATTGCCTCTGGATACTTCAATCCTAAGGCCCAATAAGACTCTTAGACAGGCTATTCAAGAATGGAAAGACAGGAACACAATCATTACGATTTCTACCATCAAATCTGAACTTGAAACAAATGAAGAAGACAGAGTGCTTCAATCCTTAGAAAAATTGCAGGCAATATGCTTAGAAAGAGAGATGCACCGGGAATGGTTAAAAATGGAGAATTACATTGCTCTTCTTGTTGGACTTCTTGGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTGTTCATCTTGTCTTTGCTTGCAAAGGATAATGCAGAGAACAAGGACGAAATTGCTAAAGTGGATAACGCACTTGAATCAATTGTTCGCTTACTTGCACGTCAAATTGAGGAAAGAAAGTTAGCATTGGAGTTGCTGTTGGAGTTATCTAAAAGTAACATGGTGTGCAATCTCATAGGAAACGTCCAAGGAAGCATACTTCTTCTGATAACAATGTTAAACAGTGATGATGTTGAAGCAACACAAAATGCACATGAGCTGCTGGAGAATCTCTCTTTTCTTGATCAGAATGTTGTAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTACTGCGGAACCTATCTACAGGGCCAGAAAATATGAAGATAACCATGACTGAGAGTTTGTCGGAAATTGCATTGACCGACCAGAATAAATTGTCCTTAGTCAAAGATGGGGCACTGCAGCCTCTTCTTCAGCTGCTGCTAAATAATGATGTGGACATCAAGAAAGTGGCTGTCAAAGCTCTACTACAGCTCTCAAGCTTACCGGAGAATGGCCTGCAGATGATTAGGGAAGGTGTTGCTCAATCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTGCGTGAACAGGTTGTTGCCACCATAATGCATCTTGCCATATCAACCACTCACCACCAAGCTGTAGCAGAACAGGTTTCATTTTTAGATTCGGAGGAAGACATATTCAAATTCTTCTCTCTAATTTCTTTGACGGAACCTGAGATACAAAACAAGATTCTCAAAGCTTTGCATGCATTGTGCCAATCTTGCTCTGGCTTTCTCATCAGAACGAGGCTGAGACAGATCTCAGCTGCTAAAGTATTGGTCCACTTGTTAGAGCTTGATACCGAAACAGTGCGGGTCAATGCCCTGAAGCTGTTCTATTGCTTGACAGAAGACGGTGACTACAACAACATCTCATCACATATAACCGAAAAGTTCATTAAAATCTTGCTTACCATCATTGAGGCTTCTGATGACGCGGAAGAGATGGTTACTGCTGTGGGTATCATCTCTAAACTACCACAGGAGTCTCACATAACCCAGTGGCTTCTAGATTGTGGAGCACTGCAAAAGATTTTAACTTGTCTTACTGATCAACGTAAGCATGCCTCACTCAAAAATCAAGTCATAGAGAACTCTGTTGAAGCTCTTTGTCGTTTTACTGTCTCAACAAATCTGGAATGGCAAAAAAGAGTAGCTGAAGAAGGCACAATCCCAGTACTGGTGCAACTGCTGGTTTCTGGATCACCTTTTTCAAAACAAAATGCAGCCATTTCAATCAAACAGTTTTCAGAAAGTTCATATCGTTTGAGCAAGCCAATAAAGAAGCCGAGCATTTTCAAACGCTGCCTTATAGCCCAAGAAACTGGTTGCTCAGCACACCTAGGGACCTGCACAGTTGAGTCTTCATTCTGCATCTTACAAGCTAATGCCTTGGAGCCCCTTGTGCGGATGCTTGCAGAGCAAGATGTTGGAATATGTGAAGCATCATTGGATGCACTATTGACTTTGCTTCACAGTGAAGCGCCACAGAGTGGAAGTAAGGTACTTGCGGATGCAAATGCTATTACACCAATGATAAAACTATTGAGCCTTCCGGCTGCTAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACAAATTTTTCAACTAGATGAAGTAAAAAATAAGTACAAATCTTTGGCCACAATGCCCTTGGTAGACATAACTCAGAGAAAAGAAGATAGCCGTTTGAAACGTCTTGCTGCCAAGGGCCTTGCTCAATTGGGTGTACTCGATAAACAGTCTTCTTATTTTTAG 2592 0.4124 MLDAEYQTAATDEEILEKIETTIQEGNADRSKANQLLASIADAVGVSTEHAALKREFEEPRSEMENAKSELDMAEALQMEQIVAVLEKADSIASVQEKENKYFEKRDSLGRIPLMPLQSFYCPISLDIMVDPVETSSGKTFERSEIEKWFAEGNNSCPLTKLPLDTSILRPNKTLRQAIQEWKDRNTIITISTIKSELETNEEDRVLQSLEKLQAICLEREMHREWLKMENYIALLVGLLGSKNREIRKRVLFILSLLAKDNAENKDEIAKVDNALESIVRLLARQIEERKLALELLLELSKSNMVCNLIGNVQGSILLLITMLNSDDVEATQNAHELLENLSFLDQNVVEMAKANYLKPLLRNLSTGPENMKITMTESLSEIALTDQNKLSLVKDGALQPLLQLLLNNDVDIKKVAVKALLQLSSLPENGLQMIREGVAQSLLELLYCHSLQSPTLREQVVATIMHLAISTTHHQAVAEQVSFLDSEEDIFKFFSLISLTEPEIQNKILKALHALCQSCSGFLIRTRLRQISAAKVLVHLLELDTETVRVNALKLFYCLTEDGDYNNISSHITEKFIKILLTIIEASDDAEEMVTAVGIISKLPQESHITQWLLDCGALQKILTCLTDQRKHASLKNQVIENSVEALCRFTVSTNLEWQKRVAEEGTIPVLVQLLVSGSPFSKQNAAISIKQFSESSYRLSKPIKKPSIFKRCLIAQETGCSAHLGTCTVESSFCILQANALEPLVRMLAEQDVGICEASLDALLTLLHSEAPQSGSKVLADANAITPMIKLLSLPAARLQEKILIALEQIFQLDEVKNKYKSLATMPLVDITQRKEDSRLKRLAAKGLAQLGVLDKQSSYF* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02140 863 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 863 - -
Rops10g02140 863 Pfam Armadillo/beta-catenin-like repeat 387 425 IPR000225 GO:0005515
Rops10g02140 863 SUPERFAMILY ARM repeat 191 480 IPR016024 -
Rops10g02140 863 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Rops10g02140 863 Gene3D - 715 850 IPR011989 -
Rops10g02140 863 Pfam U-box domain 120 186 IPR003613 GO:0004842|GO:0016567
Rops10g02140 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 191 IPR013083 -
Rops10g02140 863 Gene3D - 192 286 IPR011989 -
Rops10g02140 863 SUPERFAMILY ARM repeat 640 857 IPR016024 -
Rops10g02140 863 ProSiteProfiles U-box domain profile. 115 189 IPR003613 GO:0004842|GO:0016567
Rops10g02140 863 Gene3D - 287 713 IPR011989 -
Rops10g02140 863 SUPERFAMILY ARM repeat 388 710 IPR016024 -
Rops10g02140 863 CDD RING-Ubox_PUB 120 169 IPR045210 -
Rops10g02140 863 SUPERFAMILY RING/U-box 111 188 - -
Rops10g02140 863 SMART Ubox_2 119 182 IPR003613 GO:0004842|GO:0016567
Rops10g02140 863 SMART arm_5 303 344 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 220 260 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 607 653 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 427 470 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 386 426 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 774 814 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 262 302 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 730 770 IPR000225 GO:0005515
Rops10g02140 863 SMART arm_5 656 696 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02140 Rops-Chr10 38704931 38710820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02140 118 863 U-box Gene Family AT1G76390 28.180 3.73e-61 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02140 - - gmx:100818273 1299.26