Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02134 ATGGACACAGCTCAGTGGGCACAGGGGATTGGAGTGGTTAAACCTATGGAAGGATCAAAACCTCCTATGTTGGAGAGAAGAGCAAGACCTCAGAAAGATCAAGCTTTGAACTGCCCAAGAAGGTATTGGACTGACGGTGGTTCCTTGAGAAATGTTCCTGTGGGTGGTGGCTCAAGAAAGAACAAGAGATCCACTCCATCAACATCTTCACCAGCTCCATCATCAACCAAGAAGCTTCCTGATCTGACAACACCAAATTTCCCTCAATCTGCTTCTCAGAACCCAAAAATCCATCAAGGCCAAGATCTTAACCTAGCATATCCACCACCACCTGAGGACTATAACACCCTATCAAAATTTATTGAGGTTCCTTATAACACTGAAGCCAAGAGTCATCATACTCATCACCACCTTCAAAATCCCACTTCCTCATCATCAACATCTTCTCAGTTGTCAGCTATGGAGCTTCTCAAAACTGGGATTACTTCTTCAAGGGGTTTAAATTCTTTCATGCCCATGTCGTTATCAGATTCCAGTACAATGTATAATTCAACTGGGTTTCCTTTACCAGACTTTAAGCCAGGCCTTAACTTCAGTCTCGAAGGGTTTGAAAATGGCTATGGTGGTCTCCAAGGAATTCAAGAGGGTACTGGTGCAAGGATCTTGTTTCCTGTAGAGGATTTGAAGCAGCAGGTTCCAAACACAGCTGAGTTTGAGCAGAATAGAAATCAAGGGGATTCAACCGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 783 0.4406 MDTAQWAQGIGVVKPMEGSKPPMLERRARPQKDQALNCPRRYWTDGGSLRNVPVGGGSRKNKRSTPSTSSPAPSSTKKLPDLTTPNFPQSASQNPKIHQGQDLNLAYPPPPEDYNTLSKFIEVPYNTEAKSHHTHHHLQNPTSSSSTSSQLSAMELLKTGITSSRGLNSFMPMSLSDSSTMYNSTGFPLPDFKPGLNFSLEGFENGYGGLQGIQEGTGARILFPVEDLKQQVPNTAEFEQNRNQGDSTGYWNGMLGGGSW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02134 260 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 151 IPR045174 GO:0003700|GO:0006355
Rops10g02134 260 MobiDBLite consensus disorder prediction 1 111 - -
Rops10g02134 260 MobiDBLite consensus disorder prediction 240 260 - -
Rops10g02134 260 MobiDBLite consensus disorder prediction 130 151 - -
Rops10g02134 260 MobiDBLite consensus disorder prediction 58 100 - -
Rops10g02134 260 Pfam Dof domain, zinc finger 38 63 IPR003851 GO:0003677|GO:0006355
Rops10g02134 260 MobiDBLite consensus disorder prediction 20 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02134 Rops-Chr10 38645062 38646686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02134 23 260 C2C2-Dof Transcription Factor Family AT3G61850 35.915 8.28e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops10g02134 zf-Dof 8.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02134 - - lja:Lj0g3v0363619.1 373.629