Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02133 ATGGGTAGCTTCAGTGAAGACGAGGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTGTGTCCGTTGTGGATGCAAAATCTGATGTTTCTGATGAAGGGGTATCCATTGGTTTTGATTATGAAGTGTGGATTGGGAGCCCAAGGAGTGTGAGAGAGCGTAGGAGGAGGTTTATGAAGAGGATGGGACTGAGTACGGATCGGATTGTGCTTGAAAATTCAGTAGATGTGTGTAGTGTTGAGAGGGAAGAGGTGGTGGATAGAGTAAATGATAGTAGCGGGGCTGTGACCAGAACTTGTGGTTTTGAAGAGGAGTTCTGTTCAAGTAGGTCTTCAATGTCTTGTTGTGCTAGTATGAATTCTTCAGAGGAGTTTGGTTTAATGGAGAACTTGCCATGTCAAGAGGGAAATTTGAAGAGGGGAGTTGGGAGTAATGTGGATCAGGAGGAGCAGCAGCATAGGAAGATGAGTGATGGAAGAGATCTGGGTTCAGATCAATTGGTGGTTGCACAGGAACCTGAGGATTTTGAGCATGCCTCTAGGGTGTCTTCTTTGCATAGGGGGTTTGAAGAGAAACATGCTGATGCTTTTGATAGGAGGAAGGACAGGGTTAAAAGGGGTTGGTTCAGAAGATTGCGGTCCATAACGTGCATGGTTGATGGGCTAGGGGAAGGTGATAATCGGAAACAAGAAGGCAGTTGTGCAATCTCAGGGTGCAGGCTTCAGAAAGTTAAGGTTCGTCAATGCAAGAAGCAAATGAAGGAACTTTCAGCTCTTTACATGAGGCAAGATATCCAAGCGCATGAAGGTTCAATTTTGACCATGAAATTCAGTCCTGATGGGCAGTATCTTGCCAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAATTGACATGCCAGAAATTGATCCATCCTGCATTTACTTTACAGTGAATAATCATTCTGAATTGACACCATTGTTCATGGATAAGGAAAAAATTAGCAAACTGAAGAGCATGAGAAAAACACCAGATTCAGCTTGTGTCGTTTTACCACCTAAGATCTTCCGGTTGTTGGAGAAACCATTGCATGAATTCCGAGGGCATAGAGGGGAAGTTTTGGATCTCTCCTGGTCAAAGGATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGCAAGTGAACCATGACCATTGCTTGAAAGTTTTTTCACACAGTAATTATGTGACATGCATACAATTCAATCCCGTGGATGATAATTATTTCATTAGCGGATCTATAGATGGAAAAGTTCGCATCTGGACAATTCCTGATTGTCGTGTTGTGGACTGGATTGATATCAGAGATATAGTAACTGCAGTATGTTATCGACCTGATGGAAAGGGAGGAATTATTGGCTCCTTGGCAGGAAATTGTCGGTTTTATAATGTCTCAGAGAATCGCTTGCAGTTGGATTCCCGACTATGCTTGATTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTGGCTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTTACCTGTGCTGATACACAAGTCAGAATCCTTGATGGGCTTAATGTGATTGGCAAATACAAAAGCCTTAGCACAGGGAGCCCAATGTGTGCGTCATTTACTTCCGATGGGAAACATATTTTATCAGCATGTGAGGACTCTAATGTATATCTATGGAACGTTAGTCAGGAAGAGTCTAATCCCATGAAAGCTAAGAAGATTAGGTCTTGTGAGCGGTTTTTCTCAAATGCATCCGTTGCTGTGCCTTGGCATGGTTTGAAATCTCCAAATACCCAAAATGAACATCAATTGGAGGTCTTGGATAAAAGATCGCCTCAAGTTATACATCCCAATCCACCCACTTCGTTCTCCTTGGGCCAAGAGTTTTTCTTGGAGTCTTTTCCCAAGGGATCTGCAACTTGGCCCGAGGAGAAGCTTCCTGTGTCAAACTCCAGGACTAAAACATCAACAATACATAAATCTGAATACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCAGTGCTCATGCTTGGGGTATGGTAATTGTGACTGCTAGCTGGGATGGCAGGATAAAATCATTCCACAATTATGGGTTACCTGTACCTGTTTGA 2157 0.4293 MGSFSEDEECRFFDAQEDVVSVVDAKSDVSDEGVSIGFDYEVWIGSPRSVRERRRRFMKRMGLSTDRIVLENSVDVCSVEREEVVDRVNDSSGAVTRTCGFEEEFCSSRSSMSCCASMNSSEEFGLMENLPCQEGNLKRGVGSNVDQEEQQHRKMSDGRDLGSDQLVVAQEPEDFEHASRVSSLHRGFEEKHADAFDRRKDRVKRGWFRRLRSITCMVDGLGEGDNRKQEGSCAISGCRLQKVKVRQCKKQMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEIDMPEIDPSCIYFTVNNHSELTPLFMDKEKISKLKSMRKTPDSACVVLPPKIFRLLEKPLHEFRGHRGEVLDLSWSKDNYLLSSSVDKTVRLWQVNHDHCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWTIPDCRVVDWIDIRDIVTAVCYRPDGKGGIIGSLAGNCRFYNVSENRLQLDSRLCLIGKKKLPGRGITGFQFLPQDSNKVMVTCADTQVRILDGLNVIGKYKSLSTGSPMCASFTSDGKHILSACEDSNVYLWNVSQEESNPMKAKKIRSCERFFSNASVAVPWHGLKSPNTQNEHQLEVLDKRSPQVIHPNPPTSFSLGQEFFLESFPKGSATWPEEKLPVSNSRTKTSTIHKSEYKFLKSSCKSTSSAHAWGMVIVTASWDGRIKSFHNYGLPVPV* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02133 718 MobiDBLite consensus disorder prediction 139 161 - -
Rops10g02133 718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 442 - -
Rops10g02133 718 SMART WD40_4 444 482 IPR001680 GO:0005515
Rops10g02133 718 SMART WD40_4 361 399 IPR001680 GO:0005515
Rops10g02133 718 SMART WD40_4 402 441 IPR001680 GO:0005515
Rops10g02133 718 SMART WD40_4 257 296 IPR001680 GO:0005515
Rops10g02133 718 SMART WD40_4 673 710 IPR001680 GO:0005515
Rops10g02133 718 SMART WD40_4 534 574 IPR001680 GO:0005515
Rops10g02133 718 SMART WD40_4 493 533 IPR001680 GO:0005515
Rops10g02133 718 Gene3D - 500 710 IPR015943 GO:0005515
Rops10g02133 718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 297 - -
Rops10g02133 718 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Rops10g02133 718 PRINTS G protein beta WD-40 repeat signature 386 400 IPR020472 -
Rops10g02133 718 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Rops10g02133 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 583 IPR001680 GO:0005515
Rops10g02133 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 408 IPR001680 GO:0005515
Rops10g02133 718 SUPERFAMILY WD40 repeat-like 259 708 IPR036322 GO:0005515
Rops10g02133 718 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 401 - -
Rops10g02133 718 Gene3D - 228 499 IPR015943 GO:0005515
Rops10g02133 718 Pfam WD domain, G-beta repeat 363 398 IPR001680 GO:0005515
Rops10g02133 718 Pfam WD domain, G-beta repeat 405 440 IPR001680 GO:0005515
Rops10g02133 718 Pfam WD domain, G-beta repeat 265 295 IPR001680 GO:0005515
Rops10g02133 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 442 IPR001680 GO:0005515
Rops10g02133 718 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 297 IPR001680 GO:0005515
Rops10g02133 718 PANTHER WD REPEAT DOMAIN 44 5 715 IPR040324 -
Rops10g02133 718 MobiDBLite consensus disorder prediction 145 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02133 Rops-Chr10 38612387 38617408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02133 264 453 Miscellaneous Gene Families AT5G08390 23.232 1.47e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02133 - - gmx:100817209 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02133 10 38612387 38617408 Rops10g02133 10 38612387 38617408 ECH
Rops2g00800 2 11475058 11479453 Rops10g02133 10 38612387 38617408 PCT