Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02110 ATGGATTTGGATAGCATTGAGTGTGTGTCATCCTCCGATGGCATGGATGAGGATGAGATCCACCCTCACCATCACTCTGAGTTTTCTTCAACAAAGCCTCGTAATGGAGGCACGAATAACAATAATAATATGGGTCCCACCGCCATTGCTCCTGCAACCAGCGTTCATGAGTTATTGGAATGCCCTGTATGTACAAATTCAATGTACCCACCAATTCATCAGTGTCACAATGGCCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCTTACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCATATAGTTGCCCTTATGCTGGATCTGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTTGCTCATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGCGAAGTAGAGAATGCGACATGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTTCAGCTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGAAACTATAGCTATAGCCTAGAGGTTGGAGCCAATGGCAGAAAACTAATTTGGGAGGGTACACCACGAAGCATTCGGGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGTCTCATTATTCAACGAAATATGGCCCTATTTTTCTCTGGTGGGGATAGGAAGGAACTGAAACTCAGAGTTACGGGAAGAATATGGAAGGAACAACAGAATCCAGATTCTGGGGTGTGCATACCAAATATCTGTAGCTGA 972 0.4465 MDLDSIECVSSSDGMDEDEIHPHHHSEFSSTKPRNGGTNNNNNMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDSGVCIPNICS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02110 323 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops10g02110 323 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Rops10g02110 323 SUPERFAMILY TRAF domain-like 114 306 - -
Rops10g02110 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 113 IPR013083 -
Rops10g02110 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 302 IPR008974 GO:0005515
Rops10g02110 323 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Rops10g02110 323 SUPERFAMILY RING/U-box 48 103 - -
Rops10g02110 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Rops10g02110 323 MobiDBLite consensus disorder prediction 14 30 - -
Rops10g02110 323 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Rops10g02110 323 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Rops10g02110 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 308 - -
Rops10g02110 323 CDD Sina 175 303 - -
Rops10g02110 323 MobiDBLite consensus disorder prediction 1 43 - -
Rops10g02110 323 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Rops10g02110 323 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02110 Rops-Chr10 38336674 38340357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02110 52 309 C3H Transcription Factor Family AT2G41980 81.783 2.78e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02110 K04506 - gmx:100810573 647.891