Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02109 ATGGACAAATCAGAGCAGACTCAACAGCAGCAACAGCATGTGATGAGAGTTGTAGCAGGTGCTAGCCAAATGGCCTATTCTTCTCACTACCTGACTTCACACCTTGTTCCTTCCCCAACACAGCCTCCAGTTGCCTTCTCCATTGCCGCTCACCAACTTGCATACCAGCAAGCTCAACATTTCCATCATCAACAGCAGCAACAGCAACAACAGCAGCTTCAAATTTTATGGGCAAACCAAATGCAAGAAATTGAGGAAACGATTGACTTTAATAACCACAGCCTCCCACTTGCTAGGATAAAAAATATGATGAAAGCTGATAAAGATGCCCGGATGATTTCAGCAGAAGTTCCAAACATATTTGCAAAAGCGTGTGAAATGTTCATATTAGAGTTGACTTTGCGATCTTAA 411 0.4282 MDKSEQTQQQQQHVMRVVAGASQMAYSSHYLTSHLVPSPTQPPVAFSIAAHQLAYQQAQHFHHQQQQQQQQQLQILWANQMQEIEETIDFNNHSLPLARIKNMMKADKDARMISAEVPNIFAKACEMFILELTLRS* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02109 136 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 43 136 - -
Rops10g02109 136 SUPERFAMILY Histone-fold 58 135 IPR009072 GO:0046982
Rops10g02109 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 94 133 IPR003958 -
Rops10g02109 136 Gene3D Histone, subunit A 55 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02109 Rops-Chr10 38335304 38335714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02109 73 136 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.688 1.22e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops10g02109 CBFD_NFYB_HMF 4e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02109 K08066 - gmx:100796987 159.844