Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02105 ATGGAGTACGGTAGATTAGGACCCACCGACCCTGGTGGCTCCTCCCGCTCCGACGCTACCCTCACCGCCCCAAAATCCTCTGGCAAGAAGAAAATCACTATCTTGCTATCAGTTCTCGCCATTGTCCTGATCGCCGCCTCCGCTGTTCTTGTCACCGGCGTCCGCTCCCGTGCTTTGGGAAAAGACCAAAACACCCCTTCCCTTCACGGGAAACCGACCCAGGCTATTTCACGCACGTGCAGCAAAACAAGGTTCCCTACACTGTGCGTGAAATCTCTTCTCGATTTCCCAGGTTCCACGGCGGCCTCGGAGAAGGACCTTGTCCACATTTCCCTCAACATGACGCTTCAGCATCTCAGCAAAGCTCTTTACTCCTCCGCTGCAATCTCCACCTCTTATTCCTCCATGGACCCTCGTGTCCGTGCCGCTTATGACGATTGCCTCGAGCTTCTAGATGATTCCGTCGACGCACTCGCACGCTCCTTAACCTCCCCCTCCGCCTCCTCCTCCGATGTGCTGACGTGGCTCAGCGCCGCTCTCACCAACCAGGACACGTGCACGGAAGGGTTCACCGACACTAACGGCCCCGTCAAGGATGAGATGGCCAACAACCTCAAGGACTTGTCAGAGCTAGTAAGCAATTGTCTCGCGATATTCTCCGCCGCCGGTACCAGCGACGATTTCTCGGGGGTTCCCATACAAAACAGGAGAAGATTAATGGCAATGCGAGACGATAATTTCCCGATATGGTTGAATAAACGAGATAGGAGATTGCTGAGTTTACCCTTGTCGGCGATGCAAGCCGATATTATCGTTTCCAAGAACGGTAACGGAACGGTGAAAACAATCGCCGAAGCCATTAAGAAGGTGCCGGAGTATGGTTCACGGCGCTTCGTTATCTACATAAGGGCAGGAAGGTATGAAGAGGAGAATTTGAAGGTGGGGAGGAAGAAAACCAATGTGATGATTATAGGGGACGGGAAGGGCAAGACGGTCATTACGGGTGGTAAAAATGTTAAGGAAGGCTTGACCACATTTCATAGCGCATCCTTCGAAGCATCCAAGGGTAGCTTCCCAACTTATCTGGGTCGTCCATGGAAACTTTATTCTAGAACTGTGTACATGTTATCCTACATGGATGATCACATCCATCCACGTGGATGGCTAGAATGGAACACATCCTCCTTCGCTTTAGACACTTTGTATTATGGTGAATACATGAATCAGGGGCCTGGTGCAGCTATTGGGCAACGGGTCAAGTGGCCGGGCTATCGGGTCATAACGTCCACCGTGGAAGCAAGTAGGTTCACGGTGGCCCAATTCATATCGGGTTCTTCATGGTTACCGTCCACCGGAGTAGCATTTGTAGCTGGCTTATCCACCTGA 1386 0.5202 MEYGRLGPTDPGGSSRSDATLTAPKSSGKKKITILLSVLAIVLIAASAVLVTGVRSRALGKDQNTPSLHGKPTQAISRTCSKTRFPTLCVKSLLDFPGSTAASEKDLVHISLNMTLQHLSKALYSSAAISTSYSSMDPRVRAAYDDCLELLDDSVDALARSLTSPSASSSDVLTWLSAALTNQDTCTEGFTDTNGPVKDEMANNLKDLSELVSNCLAIFSAAGTSDDFSGVPIQNRRRLMAMRDDNFPIWLNKRDRRLLSLPLSAMQADIIVSKNGNGTVKTIAEAIKKVPEYGSRRFVIYIRAGRYEEENLKVGRKKTNVMIIGDGKGKTVITGGKNVKEGLTTFHSASFEASKGSFPTYLGRPWKLYSRTVYMLSYMDDHIHPRGWLEWNTSSFALDTLYYGEYMNQGPGAAIGQRVKWPGYRVITSTVEASRFTVAQFISGSSWLPSTGVAFVAGLST* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02105 461 SUPERFAMILY Pectin lyase-like 264 458 IPR011050 -
Rops10g02105 461 PANTHER PECTINESTERASE 42 357 - -
Rops10g02105 461 Pfam Pectinesterase 353 444 IPR000070 GO:0030599|GO:0042545
Rops10g02105 461 Gene3D - 356 461 IPR012334 -
Rops10g02105 461 SMART PMEI_2 71 218 IPR006501 GO:0004857
Rops10g02105 461 FunFam Pectinesterase 72 222 - -
Rops10g02105 461 NCBIfam pectinesterase inhibitor domain 65 220 IPR006501 GO:0004857
Rops10g02105 461 CDD PMEI-like_3 80 221 - -
Rops10g02105 461 MobiDBLite consensus disorder prediction 1 24 - -
Rops10g02105 461 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 220 IPR035513 -
Rops10g02105 461 Gene3D - 263 355 IPR012334 -
Rops10g02105 461 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 221 IPR035513 -
Rops10g02105 461 Pfam Plant invertase/pectin methylesterase inhibitor 75 218 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02105 Rops-Chr10 38217958 38221515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02105 351 460 Carbohydrate Esterase AT5G53370 81.818 2.45e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02105 - - lja:Lj1g3v0984180.1 503.827