Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02101 ATGCCGAGTCTGAAACGGTGCAGACTCGGTGGTGACTCAGTGGGTGAAGAATACGAGTTATCAAATGCTCGTAAGAAGAGAAAGACGAACGGTTACTACCCTTTGAACCTTCTTGGCGATGTCGCCGCCGGCATAATCCCGGTGAGTTTTCACGGCCTGTTGAGTGCTGACGTGTCTGAGAAAGGGTTCTCTGCATCGTGGTGCACCCAAGTTTCATGTTCCCCCGGCGAAGTGCAATCAAATTCAAAGGGTGAGATCGTGCCAACGGTGAAGAAGAACCAGGTTCAACGGCCACCACTGGTAAGAACTTCAAGGGGGCGAGTGCAGGTTCTTCCTTCACGGTTCAATGACTCAGTTATTGATAATTGGAGGAAAGAGAGCAAGACCAGCTCGCGTGATCATGATTTTGAAGATGAATTTGAATGCAAGAAGGAAAAGTTAAGCTTCAGGGCACCTAAAACGTGCAACAACAATGCAAGAAAAGGGCGAAACGATGAGAAAATTGGTTATAAGCATAGAAAGTACTCGGCATTGTGTGGGGATGATGTTGGTGTGAGGTTTAAGAATTTTGATATGAGCAAGTATTCAACTTTGCGTGGTGCATTGGCCTCAAGGCGTGAGGTGTTGGTTGAAGATGAGGGAGGAAGGTTTTTGGATGTGGAAGGAGTTGATTTGATGGGGAATGATAGAGTTTTGAGGGAGAATGGAGAAAAGAAAGATGGGTTGTATGGACCAGAAGATTTTTATGCGGGTGATTTAGTGTGGGCCAAAGCAGGGAGAAAGGATCCTTTTTGGCCAGCCATTGTGATCGATCCTATGTCTCAAGCACCTGAGTTGGTCCTAAGGTCTTGTATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTACGCGGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGTATGGCATGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAGGGGCAGTCTGAATTGAGTAACTACAATCCCTCTGACTTCCAAATGGCTATAGAGGAAGCATTTTTGGCAGACCAGGGCTTCACAGAGAAGTTGATAGCAGATATAAATTCAGCAGCTGGTAACATTGGTTATGACGATACTATTCTGAAATCCATTCAGGATGTCACTGGTTCAAACCAGTATGCAGGATATCACTTTCTGAACCAGGATTTATTTGATAAGAAAGACACACGACCCTGTGAAGCATGTGGATTAGGCCTTCCTTACAAGATGTCAAAGAAAACAAAGGATTCCACTCCTGGTGGCCAATTCCTATGTAAAACTTGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGTAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTACACGCAGAATGCGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGAACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTCAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAGCGAATGGGAACGGCACACAGGTTCAAAACTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTGCTGTTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTAATGCTCTAGTTCCTGTCAAACCTAAAAAACCTTCTCTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACAGAACGTTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCCGTTCATCAAGAATGTTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAGGCTTGTGAAACTCCTAACATCAAGCGAGAATGCTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTCGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGCATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCTTGTACCCAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGAATGGAGCTGCATTGTTCGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACACCTCTCGGGGTCATTTCAACCAAAAGCCTTCTCCAAAATAAGAAAAAAATTGGATCAAGGTTAATCTCATCCAACAGAACAAAGCAAGAAGACACTCCTGTTGGTAACTCTCTGCATGAGCCTTTCTCTGCTGCTAGGTGCCAGACCTATCAAAGAACAAATCATACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCATCAAGTGAGGGGTCACTACCATCATCCTTTAGATGCAATACAGAGTTTAAATACATACAGAGTAGTAGAGGAACATCAGGCATTTTCTTCTTTCAGAGAACGCCTTTACCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATCGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGCGAGCAAGTGAGACGCAGCGTTGCAGATCTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTGTTTAAAATAAGTGAAGAAGTGGTGGTAGATGCTACTGATAAAGGGAATATAGCACGGCTAATCAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTTGGTGATGATGAGAGCCGGATTGTTCTCATTGCTAAGACTAATGTAGCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTACCCTGCCTATGTAAAGCACCAAACTGCAGGAAATTCATGAATTAG 3207 0.4278 MPSLKRCRLGGDSVGEEYELSNARKKRKTNGYYPLNLLGDVAAGIIPVSFHGLLSADVSEKGFSASWCTQVSCSPGEVQSNSKGEIVPTVKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTSSRDHDFEDEFECKKEKLSFRAPKTCNNNARKGRNDEKIGYKHRKYSALCGDDVGVRFKNFDMSKYSTLRGALASRREVLVEDEGGRFLDVEGVDLMGNDRVLRENGEKKDGLYGPEDFYAGDLVWAKAGRKDPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKYGMIFPFMDYVDRFQGQSELSNYNPSDFQMAIEEAFLADQGFTEKLIADINSAAGNIGYDDTILKSIQDVTGSNQYAGYHFLNQDLFDKKDTRPCEACGLGLPYKMSKKTKDSTPGGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHSVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLLLEQWMLQLAEFHANALVPVKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPNIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQNKKKIGSRLISSNRTKQEDTPVGNSLHEPFSAARCQTYQRTNHTKKRAADEAISHQVRGHYHHPLDAIQSLNTYRVVEEHQAFSSFRERLYHLQRTENERVCFGRSGIHGSGLFARRNIQEGEMVLEYRGEQVRRSVADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVAAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02101 1068 ProSiteProfiles PWWP domain profile. 250 319 IPR000313 -
Rops10g02101 1068 ProSiteProfiles Zinc finger PHD-type profile. 440 496 IPR019787 -
Rops10g02101 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 685 IPR013083 -
Rops10g02101 1068 SMART PHD_3 442 494 IPR001965 -
Rops10g02101 1068 SMART PHD_3 636 683 IPR001965 -
Rops10g02101 1068 SMART PHD_3 747 803 IPR001965 -
Rops10g02101 1068 CDD PHD_TCF19_like 443 493 - -
Rops10g02101 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 498 IPR013083 -
Rops10g02101 1068 ProSiteProfiles Zinc finger PHD-type profile. 634 685 IPR019787 -
Rops10g02101 1068 ProSiteProfiles Extended PHD (ePHD) domain profile. 688 803 IPR034732 -
Rops10g02101 1068 Pfam PHD-finger 649 683 - -
Rops10g02101 1068 SUPERFAMILY FYVE/PHD zinc finger 441 497 IPR011011 -
Rops10g02101 1068 Gene3D SET domain 821 1068 IPR046341 -
Rops10g02101 1068 Pfam PHD-finger 442 495 IPR019787 -
Rops10g02101 1068 CDD SET_SETD1-like 913 1064 - -
Rops10g02101 1068 SUPERFAMILY Tudor/PWWP/MBT 243 347 - -
Rops10g02101 1068 FunFam Histone-lysine N-methyltransferase 624 685 - -
Rops10g02101 1068 ProSiteProfiles Post-SET domain profile. 1052 1068 IPR003616 -
Rops10g02101 1068 Pfam PWWP domain 251 344 IPR000313 -
Rops10g02101 1068 Pfam PHD-zinc-finger like domain 690 802 - -
Rops10g02101 1068 CDD ePHD_ATX3_4_5_like 691 802 IPR041955 -
Rops10g02101 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 805 IPR013083 -
Rops10g02101 1068 CDD PWWP_AtATX3-like 249 353 - -
Rops10g02101 1068 SMART PostSET_3 1052 1068 IPR003616 -
Rops10g02101 1068 FunFam Histone-lysine N-methyltransferase 686 805 - -
Rops10g02101 1068 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1068 IPR025780 -
Rops10g02101 1068 Pfam SET domain 937 1042 IPR001214 GO:0005515
Rops10g02101 1068 FunFam Histone-lysine N-methyltransferase 900 1068 - -
Rops10g02101 1068 SUPERFAMILY SET domain 916 1068 IPR046341 -
Rops10g02101 1068 ProSitePatterns Zinc finger PHD-type signature. 637 682 IPR019786 -
Rops10g02101 1068 ProSiteProfiles SET domain profile. 926 1043 IPR001214 GO:0005515
Rops10g02101 1068 CDD PHD_ATX3_4_5_like 636 682 IPR042011 -
Rops10g02101 1068 SUPERFAMILY FYVE/PHD zinc finger 635 699 IPR011011 -
Rops10g02101 1068 PANTHER PHD FINGER PROTEINS 78 514 - -
Rops10g02101 1068 Gene3D - 245 351 - -
Rops10g02101 1068 SMART set_7 926 1049 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02101 Rops-Chr10 38134299 38144111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02101 637 802 C2H2 Transcription Factor Family AT3G14740 32.948 4.58e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops10g02101 zf-HC5HC2H_2 2.8e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02101 - - aprc:113853254 1971.82