Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02097 ATGAAGGGGCAAGTAATCCGATTCCCCTTCCATATAGAGGGGAAGCAAGCAAAAACATGTGGATACCCAGGATTCAAAGTATCCTGTAGTGAAGAGGGCCAAACACTGCTTAACCTACCCTATTGGGGAGAAGAAGTCAGTATCAAAGCAATTAACTATGCCGCACAGCAATTATGGGTGAATGACCCCAACAACTGCCTCCCAAAACTACTTCTCTCCCTCAACCTCTCTGGCTCTCCATTTGATGCCGTTTACTACCAACAATTCACCTTCTTTAATTGTTCCTTCAACTTGGAGTACCTCGCCTATCGCTACAGCCCCATAGCTTGCCTCAGTGATTTTTCTAATTATGCTGTTTTCGCAACACCTTCTCCATCTGTGATTGTGCACTTGTCGTCACTTTGCGATTTGATTGACACGGTGAAGTTGCCCGTTCGGTCGCCGTTTTACGACCGTCGATCCTCGTCTGACCTCAGCGACGACCTCCCCCTAACGTGGGATTCGCCGCCCTGTGGGAGGTGTGAGTCCCACGGTGGCCGCTGTGGCTTCAAAAGCAACTCCACTTCTGAACTCACCTGTTTCAATGTCTCCTCCCGAGGAATTTCTCGTGGTGCACGTTACACCATACTCATCTGCTTAGGGGTTCTGGCGTTGTTGTGCTTCATTGAAATTTTGCGTTGCATCTACAGAAGGTTAAGAATAGGGACCCGCAGCTGGGCTTGGGCTCGTGAGACGGTGCCAGATTTTGAACCTCTTATTGGCCCACAGCACACCAACATCTCGGGCCTTGATGGGCCTACAATTGAATCCTACCCAAAAACAGTTATAGGTGAGAGCAGATGCTTACCCAAGCCCAATGGCAGGACCTGCCCAATATGCCTGTCAGAGTACGAGCCCAAAGAGACAGTGAAAACCATACCAGAATGTGGACATTGCTTTCATGCACAATGCATCGATGAATGGCTTCGGCTGAATGCATCGTGCCCAATTTGCCGAACTTCTCCCCGAAAGTTACCACAACAGCGTGCTCGATCATGA 1038 0.4933 MKGQVIRFPFHIEGKQAKTCGYPGFKVSCSEEGQTLLNLPYWGEEVSIKAINYAAQQLWVNDPNNCLPKLLLSLNLSGSPFDAVYYQQFTFFNCSFNLEYLAYRYSPIACLSDFSNYAVFATPSPSVIVHLSSLCDLIDTVKLPVRSPFYDRRSSSDLSDDLPLTWDSPPCGRCESHGGRCGFKSNSTSELTCFNVSSRGISRGARYTILICLGVLALLCFIEILRCIYRRLRIGTRSWAWARETVPDFEPLIGPQHTNISGLDGPTIESYPKTVIGESRCLPKPNGRTCPICLSEYEPKETVKTIPECGHCFHAQCIDEWLRLNASCPICRTSPRKLPQQRARS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02097 345 SMART ring_2 290 331 IPR001841 -
Rops10g02097 345 Pfam Ring finger domain 289 332 IPR001841 -
Rops10g02097 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 336 IPR013083 -
Rops10g02097 345 ProSiteProfiles Zinc finger RING-type profile. 290 332 IPR001841 -
Rops10g02097 345 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 335 IPR046948 -
Rops10g02097 345 SUPERFAMILY RING/U-box 289 335 - -
Rops10g02097 345 CDD RING-H2_EL5-like 290 332 - -
Rops10g02097 345 Pfam Wall-associated receptor kinase galacturonan-binding 5 62 IPR025287 GO:0030247
Rops10g02097 345 Pfam Wall-associated receptor kinase C-terminal 151 195 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02097 Rops-Chr10 38086700 38090799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02097 6 335 C3H Transcription Factor Family AT2G46495 37.798 2.02e-65 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02097 - - gmx:100818969 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02097 10 38086700 38090799 Rops10g02097 10 38086700 38090799 ECH