Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02088 ATGGGCACTTGTTTGGTAATAACATCCTCTTCCATTGGATTGTTGTTCATGCTTTGCTTTAATGTTGTGGAGCTTGCACTTGGTTCTAGCAAAGTTGAATGTCCTGATTTATCATGCGGAAATCAGGTTGTCAGATTCCCTTTCCGAATCAAAGGTCACCAACAACCTCCACTCTGTGGTTATCCTGGCTTTGATTTATTTTGTTCCTCTAATAATGAAACTATGATTGAATTCCCAGAGTCAGTGAAGCTCAACGTCAAAAATATTGACTACGAACAGCAAACAATTGAATTATCTGATCCACATGGCTGCCTTTCCAGACAGCTCCCCAACCTCACTCTGTCAGCTACCAAGTTCCAGTTCAAGCCCGACGATGGTAGTGGCTATTACTTTTTCAATTGTTCAGTGATGAACAGAGATTTGGACTACTATTTGGTTCCATGCCTAACAACCTCAACCTCTCAAGTATATGCCATTCCGTCTTCTAGAACCATCGGGTTCATCAACAGCTCTAGTAACCACAGGATCAATCCTAGGATCGTTGTTTTCTATCTTGTTCATTGCTGTAGTCTACCACTTCTATGA 585 0.4137 MGTCLVITSSSIGLLFMLCFNVVELALGSSKVECPDLSCGNQVVRFPFRIKGHQQPPLCGYPGFDLFCSSNNETMIEFPESVKLNVKNIDYEQQTIELSDPHGCLSRQLPNLTLSATKFQFKPDDGSGYYFFNCSVMNRDLDYYLVPCLTTSTSQVYAIPSSRTIGFINSSSNHRINPRIVVFYLVHCCSLPLL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02088 194 Pfam Wall-associated receptor kinase galacturonan-binding 34 100 IPR025287 GO:0030247
Rops10g02088 194 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 165 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02088 Rops-Chr10 37996812 37999413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02088 28 159 C3H Transcription Factor Family AT2G25410 35.556 5.18e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02088 - - lja:Lj0g3v0257919.2 239.195