LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g02079	ATGCAAGTTATAGCTGCATTACGAATAGCCCTTTTGGGGGTGCTCCTCATTCTGTACAATGGAAGTTGTAGATGCAAGGCAACGGATGCTCAATTCTGTTCTCGTTGGTGTGGGGTCCATAACATAAGCCGCCCTTTCCGGCTCAAAGACAGTCTAGGCAAGTGCGGTGACATTAGATACACACTATCCTGCGAGGACAACCAATTGATGCTGTATTTTGAATCTGGAAAATACTATGTACAGTCGATCAATTATAACAACTACACAATAAGAGTAGTGGATGTCAATCTTGGACAGCTTCACTACCCCTCCCTCCCTCTTTATTCTTTAACCCTCAACAATTTCAGTTTCAGCCATAATGGGGGGCCATATCAAGTGTTTATGGATTCGTCCATGGATAGATTGATGAAGACTATGTTATATGTGAGCTGTCCGAATGGGGTGGAATCCTCAGGTGTGTACGTTGATGACAGTGCAACTTGCATGAATAGTTCGTATGTGCTTGGGAATTCTTTCTATGTCAACGTTGATGGCAAATCTCTATGGGATTTGGGGCTGCCAGACTCGTGCCGAATAGAGTTTATGTACCTGACTTCGTGGCCTGATGAAATGGGTCACGGTAACATTTCATGTGGAGACATCCATGATATGCTGCTTTATGGCTTTGAACTTTCTTGGGTGAACAGTCTTTGTGAAGATAGTTGGTTATGGCATAGTTGTCAACGTCCAGATACGGATTCATTGGGTTCTACCTTGCTTTTGAACAAGGCTGCAGTCATGAATTTTCAGCAAGACAAATTTATTAGATTTCAGGATTGGAATTCCGACAAGGGTTCTGAGAGCAACTCTTCTGCATTTTCCACAACACGTTCAGGGAGAATTAGAACTACACTAAATTCGATTTCCGAGAAGTTTCAGAGGGGTTTGGAATCCAGTTCCGAGAGGATAAAGAGATTTACAAAATCATTCAAATCTTTTCCCCGTAATAGGGTTCTTGCCAGAAGTGTTAGTTCTAGAAAGAAAATCCTTGATCCACAGGGCCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGTTATCGTGTCTTATTGCTGTATCGCTTGATCCTTTGTTCTTCTATGTTCCTGTGATTGATGATGACAAGAAATGTCTTTCACTGGACAGAAAAATGGAAGTCACTGCAACTGTTTTAAGATCTTTTTCGGATATATTTTATATAATCCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCCTGGGCTATAGCAACGAGATATCTGTCATCATACTTCTTAATTGACATTCTTGCTGTTCTCCCCCTCCCACAGATGGTGATTCTAATTATCATTCCCAAGATGAAAGGTTCTGAATCACTGAATACGAAGAACTTGCTGAAATTTATTGTCTTCTTCCAATATGTGCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACCGAAACCGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTATATGCTTGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACTTGCTGGCAAGATGCCTGTAAAAAAAATAGCACATGTACCATGGCAGATATGTATTGTGATGATCATCAAGGTTTGGGCACAATTTCAAGATTCCTGAATGCTTCTTGCCCAATACAGGATCCAAAGACAGACCTCTTTAATTTTGGAATATTCCTTGATGCCCTTCAATCCGGGGTTGTGGCATCAACAGATTTCCCAGAAAAGTTCTTTTACTGTTTTTGGTGGGGTCTAAGAAATTTGAGTGCTCTTGGACAGAACCTGGAAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCCATCTCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACAAGATTGGAGGAGATGAGAGTGAAAAGAAGAGATGCAGAACAGTGGATGTCTCATCGATTACTCCCTGACAACCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAATTTGATTCGTAATCTTCCCAAGGATTTAAGAAGAGACATTCAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATATTTGAGAAAATGGATGAGCAACTTTTGGATGCAGTGTGTGACCGTCTCAAGACAGTGCTTTACACAAAAGAAAGCTGCATTGTCCGGGAAGGAGATCCTGTTGATGAAATGCTCTTCATTATGAGAGGCAAGCTATTGACCGTGACAACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATTCCTCAAAGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGAACTGTCCAAACTCTTTCAGAAGTGGAAGCCTTTGCTCTAAAAGCTGAGGACTTGAAGTCTGTTGCATCTCAATTTCGGCGCCTTCACAGTAAGCAGCTTCGCCACACTTTCAGATTCTACTCACAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCATGGAGGCGTTATGGTAAAAGAAAGCTTGAAGAGTCTCTCAAGGAAGAGGAGAATAGGTTGCAAGATGCATTGGCCAAAGCAGGTGGTAGTTCACCTAGTCTTGGTGCCACTATATATGCTTCAAGATTTGCTGCTAATGCACTTAGAGCTTTACGTAGAAGTGGTACAAGGAAGACCAGGGTGCCAGAGAGAATATCACCAATGCTGCTCCAGAAGCCTGCTGAGCCTGATTTTACTGAAGAGCAATAA	2922	0.4165	MQVIAALRIALLGVLLILYNGSCRCKATDAQFCSRWCGVHNISRPFRLKDSLGKCGDIRYTLSCEDNQLMLYFESGKYYVQSINYNNYTIRVVDVNLGQLHYPSLPLYSLTLNNFSFSHNGGPYQVFMDSSMDRLMKTMLYVSCPNGVESSGVYVDDSATCMNSSYVLGNSFYVNVDGKSLWDLGLPDSCRIEFMYLTSWPDEMGHGNISCGDIHDMLLYGFELSWVNSLCEDSWLWHSCQRPDTDSLGSTLLLNKAAVMNFQQDKFIRFQDWNSDKGSESNSSAFSTTRSGRIRTTLNSISEKFQRGLESSSERIKRFTKSFKSFPRNRVLARSVSSRKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDDKKCLSLDRKMEVTATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIATRYLSSYFLIDILAVLPLPQMVILIIIPKMKGSESLNTKNLLKFIVFFQYVPRFIRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACKKNSTCTMADMYCDDHQGLGTISRFLNASCPIQDPKTDLFNFGIFLDALQSGVVASTDFPEKFFYCFWWGLRNLSALGQNLETSTYVWEICFAIFISISGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDNLRERIRRHEQYKWQETRGVDEDNLIRNLPKDLRRDIQRHLCLALLMRVPIFEKMDEQLLDAVCDRLKTVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKAEDLKSVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYGKRKLEESLKEEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRSGTRKTRVPERISPMLLQKPAEPDFTEEQ*	974

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g02079	973	FunFam	Cyclic nucleotide-gated ion channel 1	672	736	-	-
	Rops10g02079	973	Gene3D	Helix hairpin bin	671	736	-	-
	Rops10g02079	973	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	320	969	-	-
	Rops10g02079	973	Gene3D	-	356	669	-	-
	Rops10g02079	973	Pfam	Wall-associated receptor kinase galacturonan-binding	33	94	IPR025287	GO:0030247
	Rops10g02079	973	Pfam	Cyclic nucleotide-binding domain	765	860	IPR000595	-
	Rops10g02079	973	CDD	CAP_ED	745	876	IPR000595	-
	Rops10g02079	973	MobiDBLite	consensus disorder prediction	946	973	-	-
	Rops10g02079	973	Pfam	Ion transport protein	353	672	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Rops10g02079	973	SUPERFAMILY	Voltage-gated potassium channels	344	667	-	-
	Rops10g02079	973	Gene3D	Jelly Rolls	743	863	IPR014710	-
	Rops10g02079	973	FunFam	Cyclic nucleotide-gated ion channel 1	743	861	-	-
	Rops10g02079	973	SUPERFAMILY	cAMP-binding domain-like	674	867	IPR018490	-
	Rops10g02079	973	ProSiteProfiles	cAMP/cGMP binding motif profile.	745	829	IPR000595	-
	Rops10g02079	973	Coils	Coil	897	917	-	-
	Rops10g02079	973	SMART	cnmp_10	745	876	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g02079	Rops-Chr10	37807910	37824197	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g02079	260	972	Ion Channels	AT5G53130	79.079	0.0	1155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g02079	K05391		-	gmx:100817516	1294.64