Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02077 ATGGGCACTTGTTTGGTAATAACATCCTCTTCCATTGGATTGTTGTTCATGCTTTGCTTTAATGTTGTGGAGCTTGCACTTGGTTCTAGCAAAGTTGAATGTCCTGATTTATCATGCGGAAATCAGGTTGTCAGATTCCCTTTCCGAATCAAAGGTCACCAACAACCTCCACTCTGTGGTTATCCCGGCTTTGATTTATTTTGTTCCTCAAATAATGAGACTCTGATTGAACTCCCTGAGTCAGTGAAGCTCAATGTCATAAATATTGACTATGAACAGCAAACAATTGTATTATCTGATCCACATGGCTGCCTTTCCAGACAACTCCTCAACCTCACTCTCTCAGCTACCCAGTTCAAGTTCAACCCCGACGATTATGGTGGCTATTACTTTTTCAATTGTTCAGTGATGAACAGAGATTTGGACTACTATTTGGTTCCATGCCTAACAACCTCAACCTCTCAAGTATATGCCATTCCGTCTTTTATAAAAGTCGAGGATCTGCCCCTGTGGTTTTGCACCAAAATGTTAAATATTTCATCCATCCCTTCTCTTTCACATCCTGAGGACGACTTTCTTCTATTGACATGGTCCGAGCCAGAGTGTAAACATTGCGAGTCAGAAGGGAAGAGATGTGGGAGGAAGAATAATACTGCCAACAATGAAATATATTGTTTCGGCGATCACAAAGCTTCACTCTTTTCTCAGAAACTTGTATCCTATCCCAGGTGTTCCCCTTCCACAATTCCTTATAGGCCTGTTTGTGTCATCACCGGTGCAACGTCTGGCCTAGGATTAGCTACTGCTTACAAACTTTCAAAGGAGGGCTATGTTGTTGTTGTTGTTGGACGATCACAGCAGTTATTGTCTGAGACCATAAGAAAGATCAAAGATTGGAACAAAGATGCCCACCTCAAAGCTTTTCAGGTTGACTTGTCATCAATTGAGTCAATCATGAAGTTCAAAATGTCCTTGCAGCAGTGGCTTCTGGATTCTGATTTGCACTGCTCCGTTCAGCTACTGATAAATAATGCTGGGATACTTGCAACATCACCTAGAGTCACTGCTGAGGGCTATGATCAGATGATCGGTACAAATTATATCGGTGCATTTGCTTTAACCAAGCTTCTATTACCACTTCTTGAAAGCAGTCCCGTATCTTCCAGAGTTGTGAATGTAACATCCTTTACTCATCAAGCTGTTACTGATATGCAGGTTGACGAGGGAACTATATCTGGGAAGAGATTTTTGAGTTCAAAACAATATCCATGTGCTTGCATCTATGAGTATTCTAAACTGTGCCTACTTCTCTTTTCGTTTGAGCTTCACCGACAGCTTTGCCTAATGGGTAAATCTCATCAGATATTTGTCAATGTTGCAGATCCTGGAGTTGTACAGACAAACATCATGCGAGAAGTTCCAGCACCCCTATCTTGTTTGGCATACTTTGTACTGAAACGTCTAAGACTATTGCAATCCCCTGAGTGTGGGAGTAGCTCTATAATTGATGCTGCCCTTGCTCCACCAGGAACATCAGGAGCTTACTTTTTTGGGGGAAAAGGTAGGACTATCAACTCTTCAGCACTTTCACGAAACCCCAAATTAGCACGTGAGCTTTGGGAAACTACATGTAAACTACTATCAGCTACCCCTTTTGGTGCTGAGAGTAACAATGGTTAG 1680 0.4196 MGTCLVITSSSIGLLFMLCFNVVELALGSSKVECPDLSCGNQVVRFPFRIKGHQQPPLCGYPGFDLFCSSNNETLIELPESVKLNVINIDYEQQTIVLSDPHGCLSRQLLNLTLSATQFKFNPDDYGGYYFFNCSVMNRDLDYYLVPCLTTSTSQVYAIPSFIKVEDLPLWFCTKMLNISSIPSLSHPEDDFLLLTWSEPECKHCESEGKRCGRKNNTANNEIYCFGDHKASLFSQKLVSYPRCSPSTIPYRPVCVITGATSGLGLATAYKLSKEGYVVVVVGRSQQLLSETIRKIKDWNKDAHLKAFQVDLSSIESIMKFKMSLQQWLLDSDLHCSVQLLINNAGILATSPRVTAEGYDQMIGTNYIGAFALTKLLLPLLESSPVSSRVVNVTSFTHQAVTDMQVDEGTISGKRFLSSKQYPCACIYEYSKLCLLLFSFELHRQLCLMGKSHQIFVNVADPGVVQTNIMREVPAPLSCLAYFVLKRLRLLQSPECGSSSIIDAALAPPGTSGAYFFGGKGRTINSSALSRNPKLARELWETTCKLLSATPFGAESNNG* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02077 559 Gene3D - 252 550 - -
Rops10g02077 559 PRINTS Glucose/ribitol dehydrogenase family signature 336 347 IPR002347 -
Rops10g02077 559 PRINTS Glucose/ribitol dehydrogenase family signature 254 271 IPR002347 -
Rops10g02077 559 PRINTS Glucose/ribitol dehydrogenase family signature 453 470 IPR002347 -
Rops10g02077 559 PANTHER RETINOL DEHYDROGENASE 252 547 - -
Rops10g02077 559 Pfam short chain dehydrogenase 254 397 IPR002347 -
Rops10g02077 559 Pfam Wall-associated receptor kinase galacturonan-binding 34 100 IPR025287 GO:0030247
Rops10g02077 559 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 253 526 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02077 Rops-Chr10 37793052 37807633 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02077 28 323 C3H Transcription Factor Family AT2G25410 29.653 6.39e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02077 - K11170 gmx:100818046 544.273