LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g02075	ATGATGGAGTGCAACAAAGATGAGGCAGCTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCAGAAAGAGAATATGTTGGTGCAAAGAAATTTGCTCTCAAGGCTCTAAATCTGTATCCCGATCTGGAGGATCTTTCCCAGTTTTTGACAACTCTTGATATTTATATCTCTGCTGAGAATAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCTTTTGCTGATGAGGACACTGTTAGAAAGCAGTACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGCTTGAAAGGTTTCCAACATAATACTCCCAACCATGTGGGGTCTCAATCAGATGCTCCCAGTTCAAATGGTTTTTATAATTTTAAGAAGAATGCAACTTCAAACGTGAGGACTGGAAATAATAATGCCCGAGCACCTTCAACTTCAGTTCCTCCGCCACATAAGAAGGCTGAAACTTTTTGGACTATTTGTAATCGTTGCAGGACTCATTATGAATATCTCAGGATTTATTTGAACCATACCCTTTTATGTCCCAACTGTAATGAAGCTTTTGTGGCTGTAGCGAGGGGTCCACCTCCCAATGTTTTTAAGTCATCAAATTGGTCTTCCCACAAACAACATCAGAATTCTCGACATCATGCTGAGAGTAATAATACAAACTTTCAGTGGGGATCTCACTCCAGAATGGCTGGTTTTGGTAGCACGGATGGATCATCATCTGTTGCTGCTCAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGACAAAGTGAGGAGAGAGGGAGCAGTATCAATTGCTGAATGGGAGAGGAGTCAAACGTCAAAGAGGACTGATGGTTCTTTTCATAAAGTTGAAAAACCTATGAAAAAAAGGAAGACAGATGATATTCGCATTAATGGTTATCAAGGATACATGGCAAATCAGATGGCTATGGGACATGGTGTGGCAGGGTTGGGCAGTTTTTCTGAATCTGGAAAGGCTAACTTGGAAACAGAAAGGAATTCTGGTTTTTCAGGTCTTACTGGCAAGCATTACAGCATGAGAGAGTTGTCAGTATTTGAAATACGAAACATGTTGATGGATAAGTCGCGGATTGAAATTCGTAACAAACTTCAAGAATGGAGATTAACGGCTGAAGCTAAGACTATCAACAAGGAAAAAGAGAATAAGAGACAGAAAAACACAGTTAATGACAAAACAACTGGTTCAGAGAAGTATAGACAGTCCACTGTTAATGGTAACAGACATTTGGATGCTGATTCTTTCCCTGTCACATCTGACGATACAGTTAAGAAGAACCAAGCCTATGTTACAATCAATGTTCCGGACCCTGATTTTCACAATTTTGACTTGGATAGAACTGAAGATTCCTTTGCAGAGGACCAGGTCTGGGCTGCTTATGATGATGATGATGGAATGCCTCGATATTATGCTAGAATTCACAAGGTGATCTCCATAAAGCCATTTAGAATGCGAATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATGGATTGGGTAGGTTCTGGTTTTTATAAAACTTGTGGAGACTTCAGGACTGGTAAGCACGAAATGACTGAATCATTAAATTCATTTTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTTATTCGCATCTTTCCTGGAAAGGGAGAAGTCTGGGCTCTGTATAGAAACTGGTCTCCTGATTGGAATGAACATACGCCTGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTTGAAGATTTCGATGAAGAGCAAAGAATATTGGTTACCCCCCTTATCAAAGTTCCTGGCTTTAGGACAGTGTTTCAAAGGCACACGGACCAAGATCAGGTTAGGAAGATTCCTAAAGAGGAGATGTTTCAATTCTCTCATCAGGTTCCTAATTACTTGCTAACTGGCGAAGAAGCTCCTAATGCTCCCAAGGGTTGTCGAGAGTTGGATCCAGCAGCTACTCCTTTAGACCTCCTTCAGGTAATAACAGAACCTAAGGAGGCATCGGATAATGTTTAG	2148	0.4153	MMECNKDEAARAKEIAERKFSEREYVGAKKFALKALNLYPDLEDLSQFLTTLDIYISAENKVSGEMDWYGILGVSPFADEDTVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTPNHVGSQSDAPSSNGFYNFKKNATSNVRTGNNNARAPSTSVPPPHKKAETFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVARGPPPNVFKSSNWSSHKQHQNSRHHAESNNTNFQWGSHSRMAGFGSTDGSSSVAAQAASVVQQASDKVRREGAVSIAEWERSQTSKRTDGSFHKVEKPMKKRKTDDIRINGYQGYMANQMAMGHGVAGLGSFSESGKANLETERNSGFSGLTGKHYSMRELSVFEIRNMLMDKSRIEIRNKLQEWRLTAEAKTINKEKENKRQKNTVNDKTTGSEKYRQSTVNGNRHLDADSFPVTSDDTVKKNQAYVTINVPDPDFHNFDLDRTEDSFAEDQVWAAYDDDDGMPRYYARIHKVISIKPFRMRISWLNSRSNSELGPMDWVGSGFYKTCGDFRTGKHEMTESLNSFSHKVRWTKGTRGVIRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLEDFDEEQRILVTPLIKVPGFRTVFQRHTDQDQVRKIPKEEMFQFSHQVPNYLLTGEEAPNAPKGCRELDPAATPLDLLQVITEPKEASDNV*	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g02075	715	ProSitePatterns	Nt-dnaJ domain signature.	108	127	IPR018253	-
	Rops10g02075	715	MobiDBLite	consensus disorder prediction	422	445	-	-
	Rops10g02075	715	MobiDBLite	consensus disorder prediction	251	275	-	-
	Rops10g02075	715	MobiDBLite	consensus disorder prediction	306	329	-	-
	Rops10g02075	715	MobiDBLite	consensus disorder prediction	237	275	-	-
	Rops10g02075	715	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Rops10g02075	715	MobiDBLite	consensus disorder prediction	133	183	-	-
	Rops10g02075	715	MobiDBLite	consensus disorder prediction	133	179	-	-
	Rops10g02075	715	MobiDBLite	consensus disorder prediction	422	437	-	-
	Rops10g02075	715	Pfam	DnaJ domain	67	128	IPR001623	-
	Rops10g02075	715	PANTHER	BNAC03G44070D PROTEIN	2	698	-	-
	Rops10g02075	715	Pfam	Domain of unknown function (DUF3444)	475	681	IPR024593	-
	Rops10g02075	715	CDD	DnaJ	67	120	IPR001623	-
	Rops10g02075	715	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Rops10g02075	715	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Rops10g02075	715	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Rops10g02075	715	SUPERFAMILY	Chaperone J-domain	63	156	IPR036869	-
	Rops10g02075	715	Gene3D	DnaJ domain	64	175	IPR036869	-
	Rops10g02075	715	SMART	dnaj_3	66	123	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g02075	Rops-Chr10	37757273	37762120	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g02075	5	230	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	31.197	1.08e-28	116

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g02075	-		-	cam:101501612	1247.26