Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02074 ATGAAATATATGTATTTTCTTATTGTCGCTTTCAAGATTATTAAGAAGAAGCTCACGAAACTACAGGACGCTATGGGGTTTCAAACATCACATAGCTCCAAACGGGTTGCACAGCCTATTTTCAAAGCAAAGGAGGAATCGAGCGATGCTCATGAACGCTCTTTAATTCGAAAGGCACCGAACTTGAATGGTTCTACCATATCCAATACCAAGTTTATTCCCTCTACCTATGATTCATGGGTGAAAACTGTTTTTAATTTGGAAAATCGAAAAAATGTTCATTTTACAAATCATGGTGTCGGCGACGATGGTGCGGTGGTGGTTGGCGGTGACTGGCGGCGGCCGCCGGTGGTTGTGGTGGGCGGCGACCGGAAGCCGACGGTGGTGGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGATGGTGGTGGTGGTGGTGGTGGGTGGTGGTGGTGCTGGTGGTGGTGGGTGGTGGGTGGTGATGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGAGGGTGGTGGTGGTGGTGGGTGGTGGTGGTGTGTTTTTTATTTGGAAAACAGGAAAGGCACCCTTCTGCATTGAATTCATTCGATAGAATGATGAAAGCAGCCACTGGGAAGAGAATCATCATTTTTTTAGACTACGATGGTACCTTATCACCCATTGTGAATGACCCTGATCGTGCTTTCATGTCTGATGAGATGCGGGCAGCAGTATGTGAAGTTGCTACTCATTTTCCAACAGCAATAATTAGTGGAAGAAGCAGAGATAAGGTAAAAGAGTTTGTGAAGTTAAATAATTTATATTATGCGGGGAGCCATGGCATGGACATAATGACACCATCAATGCCATTTAGATTTTCTGACAGCAAGCACTGTGACATTGCCCTTAACACCAATGGCAATGAAGTTTCCTTTCAACCTGCCAAGAAGTTTTTGCCTGCAATTCGAGAGATATTAAGAAGATTAGAGAATGGAGTAAAGGAGATACAAGGTGCAAGGTTAGAAGACAACGGATTCTGCATCTCTGTACATTTCCGGCAGGTTCAAGAAAAGGATTATAAAGTTTTGGAAGAAAGAGTGAAGTCTGTGCTTGAAAAATATCCACAATTTTACTTAACCGAGGGTAAAAAGGTTATCGAAATAAGGCCATCTATAGAGTGGAACAAGGGTAATGCTGTTGAGTATTTTCTTGACACACTAGGATTAAGCAGCTCCACCAATATCCTTCCTGTTTATATTGGCGATGATAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGTAGAGGGCAAGGTTGTCCAATTATAGTGTCTTCAATTCCAAGGGAAACAAATGCTTTGTACTCTTTGCGTGACCCATCTGAAGTACTAATCTTCTTGTCACGGCTGGCTAAATGGAAGAAAACCTCTCGCTAA 1425 0.4393 MKYMYFLIVAFKIIKKKLTKLQDAMGFQTSHSSKRVAQPIFKAKEESSDAHERSLIRKAPNLNGSTISNTKFIPSTYDSWVKTVFNLENRKNVHFTNHGVGDDGAVVVGGDWRRPPVVVVGGDRKPTVVGGGGGGGGGDGDGGGGGGGWWWCWWWWVVGGDGGGGGDGGGGGGWWWWWVVVVCFLFGKQERHPSALNSFDRMMKAATGKRIIIFLDYDGTLSPIVNDPDRAFMSDEMRAAVCEVATHFPTAIISGRSRDKVKEFVKLNNLYYAGSHGMDIMTPSMPFRFSDSKHCDIALNTNGNEVSFQPAKKFLPAIREILRRLENGVKEIQGARLEDNGFCISVHFRQVQEKDYKVLEERVKSVLEKYPQFYLTEGKKVIEIRPSIEWNKGNAVEYFLDTLGLSSSTNILPVYIGDDRTDEDAFKVIQSRGQGCPIIVSSIPRETNALYSLRDPSEVLIFLSRLAKWKKTSR* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02074 474 Pfam Trehalose-phosphatase 214 457 IPR003337 GO:0003824|GO:0005992
Rops10g02074 474 Gene3D - 211 288 IPR023214 -
Rops10g02074 474 Gene3D - 306 474 IPR023214 -
Rops10g02074 474 Coils Coil 349 369 - -
Rops10g02074 474 CDD HAD_TPP 213 459 - -
Rops10g02074 474 SUPERFAMILY HAD-like 212 471 IPR036412 -
Rops10g02074 474 FunFam Trehalose 6-phosphate phosphatase 316 474 - -
Rops10g02074 474 NCBIfam HAD-IIB family hydrolase 212 430 IPR006379 -
Rops10g02074 474 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 190 473 IPR044651 GO:0004805|GO:0005992
Rops10g02074 474 FunFam Trehalose 6-phosphate phosphatase 311 387 - -
Rops10g02074 474 NCBIfam trehalose-phosphatase 209 468 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02074 Rops-Chr10 37740036 37752693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02074 209 474 Trehalose Biosynthesis Gene Families AT1G70290 26.667 5.99e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02074 K01087 - gmx:100809194 483.411