Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02057 ATGGATAACATGGGAGATTCAAAGAGCCTGATACATGAGCTATTACAAGGTTTGGAGTTAGCTAGGCAACTCCAAGTTCATCTCCGCGTGCCTTCATCCCAAGAAACCCGTGAACTCTTGATCCAAAAGATCATATCCATATTTGAAAAAGCACTTGAAATGGCAAACTGGAAAGGAACATCACAACAGCCCTCAGGTGTTGCAATCCGAATGTCAGAATCACCACCATTGAGCGGTAGTCCCCGTAGTGAAGACTCTGACAGAGATTTGAGAGACCAAGATCAGAATGCTTCCAGAAAAAGAAACAGTTTTCCAAGATGGACAAAACAGATTAGAGTTACACCAGGAATGGGAGTAGAAGGTCCTCTTGATGATGGTTATAGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAGCCTTGTATCCAAGAGGCTATTACAGATGCACACATAGGAATGTTCAAGGCTGCATGGCCACCAAGCAAGTGCAAAGATCTGATGAGGACCCCACTGTTTTCCAAATCACTTACAGAGGAAAACACACCTGCACAGTGGCCTCCAATGTGGTCCCTACATCAACTCCACCAGAAAACCAAGAATCAATCTTGAATTCAAATCCTCAGCAGCAGAATGTCCTGCAAAGCCTTGAGCAGCAACAACCAAATGAACTACTTTTGAACCTCCGTGCAGGCCTGAAAGTCCAAACAGAGAACCTAGATTCCACTGACCAATCATTTGCTCCATTCTATTTCCCTTCAACTTCAAACATTAAAATTGAAAACCAAGTTCTCCCTTCCCCTATGCTTGAAAACTTCAGTTCTCCTTCATATATGTCCCCTAATACATCAGGAATGAACCACTTTTCGGTTTCTCCAAGTGGGGTCAATAGCTTCTCAAATTTGGCAAGTTCTGGTTTTCAGATCAATGGCATGATCCCATCTGCTGCTTCAGCTGCAAACTCACCAACCGTTGGTTTAGAGTTTCCATTTGATCAGTTTGAATTTGACGGCCAGAACTTCACATTTGATAACTCACGATTTTTCTGA 1047 0.4288 MDNMGDSKSLIHELLQGLELARQLQVHLRVPSSQETRELLIQKIISIFEKALEMANWKGTSQQPSGVAIRMSESPPLSGSPRSEDSDRDLRDQDQNASRKRNSFPRWTKQIRVTPGMGVEGPLDDGYSWRKYGQKDILGALYPRGYYRCTHRNVQGCMATKQVQRSDEDPTVFQITYRGKHTCTVASNVVPTSTPPENQESILNSNPQQQNVLQSLEQQQPNELLLNLRAGLKVQTENLDSTDQSFAPFYFPSTSNIKIENQVLPSPMLENFSSPSYMSPNTSGMNHFSVSPSGVNSFSNLASSGFQINGMIPSAASAANSPTVGLEFPFDQFEFDGQNFTFDNSRFF* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02057 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 287 IPR044810 GO:0003700
Rops10g02057 348 SMART WRKY_cls 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g02057 348 MobiDBLite consensus disorder prediction 82 99 - -
Rops10g02057 348 ProSiteProfiles WRKY domain profile. 118 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g02057 348 FunFam WRKY transcription factor 53 109 186 - -
Rops10g02057 348 Pfam WRKY DNA -binding domain 124 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g02057 348 SUPERFAMILY WRKY DNA-binding domain 122 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g02057 348 Gene3D WRKY domain 116 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g02057 348 MobiDBLite consensus disorder prediction 62 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02057 Rops-Chr10 37440734 37442682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02057 6 270 WRKY Transcription Factor Family AT4G23810 37.667 4.27e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops10g02057 WRKY 1.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02057 - - gmx:100776906 495.738