Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02053 ATGGATGACAGCTTATCTGATATTTTTGAAGACAGAGACTTTGGTGCTGATGACCTGTTTTCCATTTTGGAAAGCCTAGAAGACTTCACTGATTTTCCTCTTACTAATGAAGCTGTTACTATCTCATTTTCAAAAGAGAACGAAGACACCTCGAGATTGGTGTCTCAAAAGTCAACCTCTTTCGAAACTGAGCTGGAAACCTCACCCAGAAGCAAGAGACAGAAGCTTACCCCTACTTCGTCAGAGGAACCAAACCCAGATGGACAACAAAGGATGTCTCACATTACCGTGGAAAGAAACCGAAGAAAGCAAATGAATGAGAACTTGTCCGTCTTGAGGTCACTTATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAAGTGCTCCAAGCCCTGGAGGCCAAGAAACAAAGAAAAGTTTACAATGATGTACTGAGCCCAAGGCTAGTTTCAAGTCCAAGGCCTTCACCTCTGAGTCCTCGAAAACCACCTCTGAGCCCTCGACTAAACCTCCCCATTAGTCCAAGGACTCCACAACCAGGTAGCCCTTACAAGCCCAGGTTACAACAAGGTTACATTTCACCTACCATATCCAACTCTCTCGAACCATCTCCTACTTCTTCTGCTTCCTCAGTTAATGACAATATCAATGAACTCGTTGCCAATTCCAAGTCTCCTATTGCTGATGTGGAGGTCAAGTTTTCAGGTCCACATCTTCTTTTGAAAACTGTATCTCAACGAATTCCAGGGCAAGCTTCGAAGATCATATCAACCCTTGAAGAGCTTGCTCTTGAAATCCTTCATGTTAACATTACCAGTACTGCTGATGATACCATGCAAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGTTAA 969 0.4303 MDDSLSDIFEDRDFGADDLFSILESLEDFTDFPLTNEAVTISFSKENEDTSRLVSQKSTSFETELETSPRSKRQKLTPTSSEEPNPDGQQRMSHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYNDVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYKPRLQQGYISPTISNSLEPSPTSSASSVNDNINELVANSKSPIADVEVKFSGPHLLLKTVSQRIPGQASKIISTLEELALEILHVNITSTADDTMQNSFTIKIGIECQLSAEELAQQIQQTFC* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02053 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Rops10g02053 322 MobiDBLite consensus disorder prediction 45 93 - -
Rops10g02053 322 PANTHER TRANSCRIPTION FACTOR FAMA 5 321 IPR044283 GO:0003700|GO:0010052
Rops10g02053 322 FunFam Transcription factor SPEECHLESS 81 155 - -
Rops10g02053 322 CDD bHLH_AtFAMA_like 92 163 - -
Rops10g02053 322 Pfam Helix-loop-helix DNA-binding domain 90 141 IPR011598 GO:0046983
Rops10g02053 322 Coils Coil 133 157 - -
Rops10g02053 322 MobiDBLite consensus disorder prediction 45 65 - -
Rops10g02053 322 Gene3D - 81 155 IPR036638 GO:0046983
Rops10g02053 322 SMART finulus 95 146 IPR011598 GO:0046983
Rops10g02053 322 MobiDBLite consensus disorder prediction 72 93 - -
Rops10g02053 322 MobiDBLite consensus disorder prediction 162 205 - -
Rops10g02053 322 MobiDBLite consensus disorder prediction 168 197 - -
Rops10g02053 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 161 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02053 Rops-Chr10 37387133 37389199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02053 9 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.613 2.67e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g02053 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02053 K20558 - gmx:100777437 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02053 10 37387133 37389199 Rops10g02053 10 37387133 37389199 ECH