Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02023 ATGGGAAGGTGTTGGTTAGTTGGGGTGTTGATTGTGGTGGGCTGTACCTGCTTCCTGGGCAGTGTTGGGGTTGAAGGGTACCCAGATGAGGATCTGGTGGTAAGGTTGCCTGGTCAACCCAAGGTTGGGTTCAAACAATATGCTGGGTATGTTGATATAGATGTCAAGCATGGGAGGAGCCTGTTCTACTATTTTGTGGAGGCTGAGCATGACTATGACAAGAAGCCCCTCACCCTATGGCTAAATGGAGGTCCTGGATGTTCCTCCATTGGAGGAGGTGCCTTCACTGAATTGGGTCCCTTTTATCCTAGAGGTGATGGACGTGGTCTCCGAAGAAATTCAATGGCTTGGAATAGAGCATCCAACATCCTCTTTGTGGAATCTCCTGCTGGAGTTGGTTGGTCATACTCGAATACTTCTTCAGATTATAACACTGGAGACGCGTCCACAGCCAACGATATGCTTTTGTTCATGCTAAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGTTGTTCCTTACTGGAGAAAGCTATGCAGGCCATTACATACCACAGTTAGCTAATGTTATTCTGGACCATAATGCTCATTCAACTGGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGGAACCCTCTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCCGATGAAATTGGCCTTGCCATTATGAATGATTGCGACTTTGATGACTATGTCTTTGCAAATCCTCACAATGTATCTAAATCATGCAACGATGCCATAGAGGAAGCAAATGAAATTGTTAGCTATTATATAAACAACTATGATGTCATTCTTGATGTTTGTTATCCATCCATAGTAGAACAAGAACTGAGATTGAAAAAGATGGCTACTAAACTAAGTATAGGTGTAGATATCTGTATGAGTTATGAAAGAAGCTTTTACCTAAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCATATCGATGGTCCATGTGCAGTGGTGTTTTAAATTATAGCGACACTGATCCAAACATCAATATCCTTCCAGTTCTCAAACGGATAGTCCAGAACCATATTCCTGTTTGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGTGAACTAGCACATGACCTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGGGGTTGGCTAACGGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGGGGAGCTGCTCACATGGTGCCATATGCACAACCTTCTAGAGCACTGCATCTATTCAGTTCATTTGTGCGTGGTAGGAGATTGCCAAACACAACACACCCGTCAATTGATGAATAA 1422 0.4311 MGRCWLVGVLIVVGCTCFLGSVGVEGYPDEDLVVRLPGQPKVGFKQYAGYVDIDVKHGRSLFYYFVEAEHDYDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPRGDGRGLRRNSMAWNRASNILFVESPAGVGWSYSNTSSDYNTGDASTANDMLLFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLANVILDHNAHSTGFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAIMNDCDFDDYVFANPHNVSKSCNDAIEEANEIVSYYINNYDVILDVCYPSIVEQELRLKKMATKLSIGVDICMSYERSFYLNLPEVQKALHANRTNLPYRWSMCSGVLNYSDTDPNINILPVLKRIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWLTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVRGRRLPNTTHPSIDE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02023 473 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Rops10g02023 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 447 IPR001563 GO:0004185|GO:0006508
Rops10g02023 473 Gene3D - 314 350 - -
Rops10g02023 473 FunFam Carboxypeptidase 27 291 - -
Rops10g02023 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Rops10g02023 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Rops10g02023 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Rops10g02023 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Rops10g02023 473 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Rops10g02023 473 Gene3D - 361 460 - -
Rops10g02023 473 Pfam Serine carboxypeptidase 38 460 IPR001563 GO:0004185|GO:0006508
Rops10g02023 473 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Rops10g02023 473 SUPERFAMILY alpha/beta-Hydrolases 25 467 IPR029058 -
Rops10g02023 473 FunFam Carboxypeptidase 361 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02023 Rops-Chr10 36826091 36826345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02023 321 463 Calmodulin-binding Proteins AT2G22960 25.874 6.04e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02023 K16297 - gmx:100815723 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02023 10 36826091 36826345 Rops10g02023 10 36826091 36826345 ECH