Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02012 ATGTCGAGCACAGCTGGTCAGGTCATCAAATGCAAAGCCGCGGTTGCATGGGAGGCAGCGAAGCCACTGGTGATTGATGAAGTAGAGGTGGCTCCACCAAAGGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCCCTTTGCCATACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCCGGAGGGATTGTGGAGAGCGTAGGCGAGGGTGTGACCCATCTGAAACCAGGGGATCATGCCCTCCCTGTGTTCACAGGGGAGTGCGGGGAATGCCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTGCTAAGGATCAACACTGAACGGGGTGTCATGATCAATGACAACCAGACAAGGTTCTCTATAAAGGGAAAGCCCGTTTACCATTTTGTGGGTACCTCTACATTCAGTGAATACACTGTGGTTCATGCTGGATGTGTTGCAAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAAAATCATTGGGGTTGATTTAGTTTCCAGCCGATATGAAGAAGCTAAGAAGTTTGGGGTCAATGCGTTCATTAACCCAAAAGATCATGACAAACCTGTTCAACAGGTAATTGCTGAAATGACGAATGGAGGCGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATCTCAGCATTTGAATGTGTCCATGATGGTTGGGGTCTTGCTGTACTTGTTGGAGTGCCAAGTAAAGATGATGCGTTCAAAACTCATCCTATGAATTTCTTGAATGAGAGGACTCTTAAGGGTACTTTCTATGGTAACTACAAACCCCGCACTGATCTTCCTAATGTTGTGGAGAAGTACATGAAAGGGGAACTGCAGCTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATCAACAAAGCATTTGATTACATGCTGAAAGGGCAGTCCATCAGATGTATCATCCGAATGGAGGAGTAA 1149 0.4674 MSSTAGQVIKCKAAVAWEAAKPLVIDEVEVAPPKAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTERGVMINDNQTRFSIKGKPVYHFVGTSTFSEYTVVHAGCVAKINPAAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASKIIGVDLVSSRYEEAKKFGVNAFINPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGLAVLVGVPSKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELQLELEKFITHTVPFSEINKAFDYMLKGQSIRCIIRMEE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02012 382 Gene3D - 20 372 - -
Rops10g02012 382 PANTHER ALCOHOL DEHYDROGENASE 6 378 - -
Rops10g02012 382 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Rops10g02012 382 SUPERFAMILY GroES-like 329 379 IPR011032 -
Rops10g02012 382 SUPERFAMILY GroES-like 4 186 IPR011032 -
Rops10g02012 382 FunFam Alcohol dehydrogenase class-P 183 321 - -
Rops10g02012 382 Gene3D - 183 321 - -
Rops10g02012 382 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Rops10g02012 382 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Rops10g02012 382 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Rops10g02012 382 CDD alcohol_DH_plants 9 379 - -
Rops10g02012 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02012 Rops-Chr10 36670846 36673572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02012 1 370 Monolignol Biosynthesis Gene Families AT1G72680 24.194 3.07e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02012 K18857 - gmx:100783858 729.939