Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02002 ATGTCGGTAGTTGGATCCGCTGAGCTAGGTCCTACATCATATAAAAATGCTAAGCTCTACTCACTAAAGGGAACTAAAGTTAGACCTGGCTTGCCCTCCCAATTTTGTGATCCTGATAAGCATAGAAGCATGTACATGACAGACACTTGTTGCTCCAGCGAGAGTCACGAGAAGGACTTTCATGACTCTCAAACAGAAGAACTAATAGAACCATCTAGTTCCAGCATCTCAAGTAGTTCCCTCCACTCCTCTTCTTACCAGCTCAGAGATAGTTCAGGAGCTTCTATGGTTGCTAATAACACATTTGATACTCCTTCCATTTCTACGAGGCATCAAGATGCTTATCAGTCCAACTTTGGATCAGATTTGTTGGAAAATGGATGCCTGGATTCACGTGACCATGATGGTCTAATGAGATTAAAACTACAAGCATTGGAGAGGGCATTGCTTGATGATAGTGATGCTGAGGAGGAGGAGGAGGAGGACATATATGGGACTGCTCAAAGCATGGAAATTGATCCTGGCATTGCCGAGTGTGCTGATCCCATTCAGAATATGCTGCTCCATGACTCACCAAAGGAGTATTCATCTTCAGATTCCAATATTAGCAGCACCAGTAGAACCAAGGAAATATCACAAGTTACTAGAACACCCAAGCAATTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAATGAAGGGGAAGCCTCATCGATGATAAGTAGTCTCCGGCAAATGGTCTCAATTCAAGGAGAGCCTTCCCAAAGAATTGCAGCCTATATGGTGGAGGGACTTGCAGCTCGCCTTGCTGAATCTGGAAAAAGTATTTATAAAGCTCTGAAATGCAAGGAACCTCCTTCTTCAGACCGTTTAGCAGCCATGCAGATACTGTTTGAGGTTTGCCCATGTTTTAAATTTGGATTCATTGCTGCCAACAATGCAATTACAGAGGCAGTTAAAGATGACATGAACATTCATATAATAGATTTTGACATCAATCAAGGAAGTCAGTACATAAATCTAATCCAAACACTTGCTTCAAGGTCCAATAAGCCATATCATGTCAGATTGACTGGGGTTGATGATCCTGAGTCTGTGCAACGTTCTGTTGGAGGCCTAAAGATCATAGGACAAAGACTTGAAAAACTAGCAGAAGCACTTGGGTTGCCATTTGAGTTTAAAGCAGTGGCATCAAGGACTTCCATTGTCACCCCATCAATGCTCAATTGTCATCCTGGAGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACAGTAAATGAAAGAGACCAACTTCTTCGCTTGGTAAAGAGCCTGAATCCAAAGATTGTAACGGTTGTGGAGCAAGATGTAAACACAAACACTACCCCTTTCTTACAGAGATTTTCTGAAGCCTATAATTACTACTCTGCTGTGTTTGAATCACTTGATGTTACACTTCCTAGAAACAGTCAAGACAGGATGAATGTTGAAAGACAATGCTTGGCAAGGGACATTGTGAATACTGTTGCATGTGAAGGTGAGGATAGGATAGAAAGGTATGAAGTTGCGGGTAAATGGAGAGCAAGGATGAGAATGGCTGGCTTCACTTCATCTCCAATGAGCATAAATGTGACTGATGAAATCAGAAAACTCATTAAGATGTACTGTGACAGGTACAAGATAAAGGAGGTAATGGGGGCGTTACATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCTTGGAGGTGA 1767 0.4205 MSVVGSAELGPTSYKNAKLYSLKGTKVRPGLPSQFCDPDKHRSMYMTDTCCSSESHEKDFHDSQTEELIEPSSSSISSSSLHSSSYQLRDSSGASMVANNTFDTPSISTRHQDAYQSNFGSDLLENGCLDSRDHDGLMRLKLQALERALLDDSDAEEEEEEDIYGTAQSMEIDPGIAECADPIQNMLLHDSPKEYSSSDSNISSTSRTKEISQVTRTPKQLLYECAIALSEGNEGEASSMISSLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMNIHIIDFDINQGSQYINLIQTLASRSNKPYHVRLTGVDDPESVQRSVGGLKIIGQRLEKLAEALGLPFEFKAVASRTSIVTPSMLNCHPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKIVTVVEQDVNTNTTPFLQRFSEAYNYYSAVFESLDVTLPRNSQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMRMAGFTSSPMSINVTDEIRKLIKMYCDRYKIKEVMGALHFGWEDKNLIVASAWR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02002 588 MobiDBLite consensus disorder prediction 191 213 - -
Rops10g02002 588 MobiDBLite consensus disorder prediction 67 85 - -
Rops10g02002 588 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 583 IPR005202 -
Rops10g02002 588 MobiDBLite consensus disorder prediction 55 85 - -
Rops10g02002 588 Pfam GRAS domain family 219 588 IPR005202 -
Rops10g02002 588 ProSiteProfiles GRAS family profile. 209 588 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02002 Rops-Chr10 36514028 36517389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02002 1 588 GRAS Transcription Factor Family AT1G21450 60.504 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops10g02002 GRAS 6.6e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02002 - - gmx:100798897 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02002 10 36514028 36517389 Rops10g02002 10 36514028 36517389 ECH
Rops9g02448 9 45429795 45433482 Rops10g02002 10 36514028 36517389 PCT