Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02001 ATGGATGATTCTTCAGCTGGTGAAGACACCAAGAGTTGTCCTCGTGGTCACTGGAGACCCGCTGAGGATGAAAAGCTTCGACAACTTGTTGAACAATATGGTGCTCAGAACTGGAATTCAATTGCTGAGAAACTCCAAGGAAGATCAGGGAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTTGACCCGAGAATTAATAGAAGACCGTTCACGGAAGAGGAAGAAGAGAGGTTACTTGCAGCTCATAGAATTCATGGGAACAAGTGGGCACTTATAGCCAGGCTTTTCCCTGGTAGAACTGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCAAGAAAGCAAAGGGAACGGTCCAAGTTATGTGGGAAGAGAAGTTTCCAAGACGTTTATAATGATTCTTCTAACACTTGTTCCTCCTCCATTAACTTCCCTGAAAAACGATCATCTCAACAAGACCTATTATGTGGCACAAGAATTGGGTTACAGAATAGCAGATTCTTTGACTTCCGGAACCTTGATAAAGATAGGATAGTCGCAGTTGCAGATACTCCTTCTAGTTCTCTTCCCTCTTGGAATTTTGCATCTGTGCCAACCACCACAAACAGTTCTTATGTGAAAGCGTCTTGCTCTAATAATATTTACCTCTCAGAATGTTCTAAAAGCTCAGATAGATTTCTTCACAGAATTTATCCAAATTCTACATCCTTCAGCAGCTTCCGTGGTTCCAATACCGCATTTTCACTTCCGAATTACAAGAGGGTTGTTCCAAGTCCTTTTGGGTTCTTTGGTTCTTCTGATGATGGAAGGATAAAGAGGGATTTGATGAGTTCCTGTGATGACTCCTCCACATCCACAGAGAAAGAGCAAGCAGATGAGCCCAATATTGAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 948 0.4188 MDDSSAGEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQRERSKLCGKRSFQDVYNDSSNTCSSSINFPEKRSSQQDLLCGTRIGLQNSRFFDFRNLDKDRIVAVADTPSSSLPSWNFASVPTTTNSSYVKASCSNNIYLSECSKSSDRFLHRIYPNSTSFSSFRGSNTAFSLPNYKRVVPSPFGFFGSSDDGRIKRDLMSSCDDSSTSTEKEQADEPNIEHKEVPFIDFLGVGVSSS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02001 315 CDD SANT 18 59 IPR001005 -
Rops10g02001 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops10g02001 315 SMART sant 14 63 IPR001005 -
Rops10g02001 315 SMART sant 66 114 IPR001005 -
Rops10g02001 315 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Rops10g02001 315 Pfam Myb-like DNA-binding domain 18 78 - -
Rops10g02001 315 Gene3D - 69 131 - -
Rops10g02001 315 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Rops10g02001 315 FunFam MYB transcription factor 68 140 - -
Rops10g02001 315 MobiDBLite consensus disorder prediction 1 21 - -
Rops10g02001 315 PANTHER MYB PROTEIN-RELATED 15 199 - -
Rops10g02001 315 MobiDBLite consensus disorder prediction 275 296 - -
Rops10g02001 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Rops10g02001 315 CDD SANT 78 109 IPR001005 -
Rops10g02001 315 Gene3D - 15 66 - -
Rops10g02001 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops10g02001 315 FunFam MYB transcription factor 15 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02001 Rops-Chr10 36491119 36492886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02001 13 166 MYB Transcription Factor Family AT1G17950 60.920 1.10e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g02001 Myb_DNA-bind_6 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02001 K09422 - gmx:100802283 430.639