Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01983 ATGTATGTACATTCCAAGCAGCTGCTGATGCTGCTACTTGTTGTCATCCTTCTCACAGCAATAGCAACAGCAACTGAACCCATTTCAAAGCCAAACTGCCCAACAAAGTGTGGCTTAGTCACCATTCCCTTCCCATTTGGTACCACCAAGGGTTGTTCCCTGGACACCTCTTTTCTCATCAATTGCAACCAAACCTCTTCTTCATCACACACTCCTTTCTTGCCACAAACTAATATAAGTGTGCTCAACATCTCACTTAACGGCGAACTGCAAGTTGCATGGCCAGTAGCCAGCGATTGCTACACTGATAAAGGCAAACTCGTGAATCAAACAGTTCCGGTAGTCAACCTGACGCATTTTCACGTTTCGTCAAGTCGAAACAAGTTCACCGTGGTTGGCTGTGACACTGTTGGAGTAATGGTGGGAATCGAATCTGATCAGGGAAAGAACTACACCTCGGGATGCGTATCTTTATGCTACAGTCTTGATGATATCGAAACCAATGGGTCTTGCTCTGGCACTGGTTGTTGCGACACTTCAATACCCCAAGGGCTATCAAAGTTCGCCTATGCTTCTGTGACCGTGTTGAACAACCACACAAGCGTGGTGGACTTTAATCCATGCGGTTATGCTTTTGTGGTGGAAGATGGAGCCTACAACTTCTCATCCACAGACCTCGCCAGGCTTGAGAAAACGGAGTTTCCTGTGGTGCTGGAATGGGCGGTGGGGAACCAAACGTGCCAACAAGCTCAGAAGGAGGTTTCAAGTTATGCCTGTAAGTCAGAGAGCAGTGAGTGTTACGATTCAACAGAGGGACCTGGTTACCTTTGCAACTGCTCTCTTGGTTTTCGGGGAAACCCTTACCTCCCTCATGGCTGCCAAGATGTTAATGAATGCGTGGAATCCAACGACTGTGTTGATGGGGCTACATGCAACAACTTTCCCGGGAGCTACAATTGTTCATGCCCGGAAGGATATGAAGGAGATGGGAAAAATGATGGAACAAGATGTAGTCCCAAATCTAGTACCAATTCAGGAAGAGAGATCATGCTGATAATTGCTTTGAGTGCGAGTGTAAGCATCATGGCACTACTCGTGGGAAGCTTTTATGGGTATTGGGTATTAAGGAAAAGAAAGCACATCAAACTTACAGAACAATTTTTTCAACAAAATGGTGGCCTATTGTTACAACAACAGATAGCCAGGCATAATGGGTCAACTGAAACAGCTAAAGTCTTCACTGTGCAAGAGCTAAAGGAGGCCACTGACAACTTCCATGAAAGCAAGATCCTAGGCCAAGGGGGCCAGGGAACAGTTTACAGAGGAGTATTACTAGATAACAGAACCGTCGCAATAAAAAAATCGAAAATCAATGATCCAAACCAGGTTGAGCAGTTCATCAATGAGGTGATCGTCCTTTCCCAAATCAACCATAGGAATGTGGTAAAGCTCTTGGGCTGTTGTTTAGAGACAGAAGTTCCCTTACTTGTTTATGAATTCATTCCCAGTGGTACTATTTATGAGCATCTTCATCAGCAAAGCCATGCTTTAAAACTTACATGGAAAACAAGGTTGAGAATAGCAGCAGAAACTGCTGGAGCCCTGGCATACTTGCATTCTGCTACTTCTACACCAATCATACACAGAGATGTGAAAACTACAAATATACTACTTGATCATAATCTCACTGCAAAAGTTTCTGATTTTGGAGCTTCTAGAATTATTCCTCTTGATCAATATCAGTTAACCACTTTGGTGCAGGGGACACTGGGGTATCTTGACCCAGAATACTTCCACACAAGCCAGTTAACAGATAAGAGTGATGTGTATAGCTTTGGGGTTGTCCTAGCAGAACTACTGACAGGAAAGAAGGCACTCTCTTTTGATAGGCCTGAAGCTGATAGAAACCTTGGAATGTACTTCGTTTCTTCAGTGAAAGAGGGTCAGTTACTCCACATTGTGGACAGCCACATAATAGATGAGGCAAATGCTGAGCAACTAATGGAAGTTGCCAATATGGCAAAAAGATGTTTAGGGGTGAAGGGAGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATAATAGTTGCGGAAAAGCACCGATGGGAAAGAGACAATTTGTGTTCAGAAGAGACTGAAAACTTACTCCAAACAACATCTGTTTTTAGTGTCACAGATGGTGTTGGTGGAAGTGGCATTAGTTATTATGGCTTTGCTAGCTTGAACCAAATTTCAATGTCATCTGGTGGTGGAAGATGA 2271 0.4399 MYVHSKQLLMLLLVVILLTAIATATEPISKPNCPTKCGLVTIPFPFGTTKGCSLDTSFLINCNQTSSSSHTPFLPQTNISVLNISLNGELQVAWPVASDCYTDKGKLVNQTVPVVNLTHFHVSSSRNKFTVVGCDTVGVMVGIESDQGKNYTSGCVSLCYSLDDIETNGSCSGTGCCDTSIPQGLSKFAYASVTVLNNHTSVVDFNPCGYAFVVEDGAYNFSSTDLARLEKTEFPVVLEWAVGNQTCQQAQKEVSSYACKSESSECYDSTEGPGYLCNCSLGFRGNPYLPHGCQDVNECVESNDCVDGATCNNFPGSYNCSCPEGYEGDGKNDGTRCSPKSSTNSGREIMLIIALSASVSIMALLVGSFYGYWVLRKRKHIKLTEQFFQQNGGLLLQQQIARHNGSTETAKVFTVQELKEATDNFHESKILGQGGQGTVYRGVLLDNRTVAIKKSKINDPNQVEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIPSGTIYEHLHQQSHALKLTWKTRLRIAAETAGALAYLHSATSTPIIHRDVKTTNILLDHNLTAKVSDFGASRIIPLDQYQLTTLVQGTLGYLDPEYFHTSQLTDKSDVYSFGVVLAELLTGKKALSFDRPEADRNLGMYFVSSVKEGQLLHIVDSHIIDEANAEQLMEVANMAKRCLGVKGEERPTMKEVAMELEGIIVAEKHRWERDNLCSEETENLLQTTSVFSVTDGVGGSGISYYGFASLNQISMSSGGGR* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01983 756 ProSitePatterns Calcium-binding EGF-like domain signature. 295 320 IPR018097 GO:0005509
Rops10g01983 756 Pfam Wall-associated kinase 169 280 IPR013695 GO:0004674|GO:0016020
Rops10g01983 756 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Rops10g01983 756 SMART serkin_6 425 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01983 756 Gene3D Transferase(Phosphotransferase) domain 1 501 720 - -
Rops10g01983 756 SMART egfca_6 295 338 IPR001881 GO:0005509
Rops10g01983 756 Pfam Protein tyrosine and serine/threonine kinase 428 695 IPR001245 GO:0004672|GO:0006468
Rops10g01983 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 699 IPR045274 GO:0007166
Rops10g01983 756 ProSiteProfiles EGF-like domain profile. 295 338 IPR000742 -
Rops10g01983 756 Gene3D Phosphorylase Kinase; domain 1 397 500 - -
Rops10g01983 756 SUPERFAMILY Protein kinase-like (PK-like) 408 695 IPR011009 -
Rops10g01983 756 Pfam Wall-associated receptor kinase galacturonan-binding 33 88 IPR025287 GO:0030247
Rops10g01983 756 ProSiteProfiles Protein kinase domain profile. 425 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01983 756 Pfam Calcium-binding EGF domain 295 337 IPR001881 GO:0005509
Rops10g01983 756 SMART egf_5 246 294 IPR000742 -
Rops10g01983 756 SMART egf_5 298 338 IPR000742 -
Rops10g01983 756 FunFam Wall-associated receptor kinase 2 395 500 - -
Rops10g01983 756 CDD EGF_CA 295 329 - -
Rops10g01983 756 Gene3D Plasmodium vivax P25 domain 194 344 - -
Rops10g01983 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Rops10g01983 756 CDD STKc_IRAK 431 698 - -
Rops10g01983 756 SUPERFAMILY EGF/Laminin 294 331 - -
Rops10g01983 756 FunFam Fibrillin 2 294 333 - -
Rops10g01983 756 FunFam Wall-associated receptor kinase 2 501 718 - -
Rops10g01983 756 FunFam Wall-associated receptor kinase 2 245 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01983 Rops-Chr10 36239108 36242868 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01983 1 753 Receptor kinase-like Gene Family AT1G21230 46.728 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops10g01983 PK_Tyr_Ser-Thr 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01983 - - gmx:100798027 1121.3