Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01979 ATGGATGTGCATCATTTCAAGCAGCTGCTGATGCTGCTACTTGTTGCCATCCTTTTCGCAGCAAAAGTAACAGCAACTGAACCCATATCAAAGCCAAACTGCCCAACAAAGTGTGGCTCCGTCACAATTCCCTTCCCATTTGGCACCACCAAGGGTTGTTCCCTGGACAGCACCTTTCTCATCAATTGCAATCAAACCTCTTCTTCATTGCACACTCCTTTCTTGCCACAAAGTAATAGAAGTGTGCTAAACATCTCACTCAACGGTGAACTTCGCGTTGCATGGCCAGTAGCCAGCTATTGCTACGCTAATAGAGACAAACTCGTGAATCAAACAGTTCCGGAAGTCAACCTGACGCGTTTTCACGTTTCGTCAAGTCGAAACAAGTTAACCGTGGTTGGCTGTGACACTGCTGGAGCAGTGGTGGGATTCGATTCTGATCAGGGAAAGAACTACACCACGGGATGCGTATCTTTATGCTACAGTCTTCATGATATCGAAACCAATGGGTCTTGCTCTGGCACTGGTTGTTGCGACACTTCAATACCCCAAGGGCTATCAAAGTTCCGCTATGCTACTGCGGCCGCGTTCAACAACACACCAGTGCTTGACTTCAATCCATGCGGTTATGCTTTTCTGGTGGAAAATGGAGCCTACAACTTCTCATCCACAGACCTCGTCAGGTTTGAGAAGACGGAGTTTCCTGTGGTGTTGGATTGGGCGGTGGGGAACCAAACGTGCCAACAAGCTCAGAAGGAGGTTTCAAGTTATGCGTGTAAGGCTCAGAACAGTGCGTGTTACAATTCAAAGGAGGGAACCGGTTACCTTTGCAACTGCTCTCGCGGTTTTCGGGGAAATCCTTACCTCCTTCATGGCTGCCAAGATGTTGACGAATGCATGGAATCCAACGGCTGCGTTGATGGGGCGACATGCAACAACTTTCCTGGGAGCTACAATTGTTCATGCCCGAAAGGATATGAAGGGGATGGAAAAAATGATGGAACAAGATGCAGTCCCAAATCCAGGAAACAGATCATACTGATAGTTGTTTTGAGTGCGAGTGTAAGCGTCATGGCACTACTCGTGGGAAGCTTTTATGGGTATTGGGTATTAAGGAAAAGAAAGCACATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCCTATTGTTACAACAACAGATAGCCAGGCATAATGGGTCAACTGAAATGGCTAAAGTCTTCACTGTGCAAGAGCTAAAGGAGGCCACCAACAACTTTGATGAAAGCAAGATCCTAGGCCAAGGTGGCCAGGGAACAGTTTACAGAGGACTATTACTAGATAACAGAACCGTCGCAATAAAAAAATCGAAAATCAGTGACCAAAACCAGGTTGAGCAGTTCATCAATGAGGTCATCGTGCTTTCCCAAATCAACCATAGGAATGTGGTAAAGCTCTTGGGGTGCTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTCTCAATGGTACTATTCATGAGCATCTTCATCAGCAAAGCCATGCTTTAAAACTTACATGGAAAACAAGGTTGAGAATAGCAGCAGAAACTGCTGGAGCCCTGGCATACTTGCATTCTGCTACTTCTACACCAATCATACACAGAGATGTGAAAACTACAAATATACTACTTGATCATAATCTCACTGCAAAAGTTTCTGATTTTGGAGCTTCTAGAATTATTCCTCTTGATCAATATATGTTAACCACTTTGGTGCAGGGGACACTGGGGTATCTTGACCCAGAATACTTCCACACAAGCCAGTTAACAGAGAAGAGTGATGTGTATAGCTTTGGGGTTGTCCTAGCAGAACTACTGACAGGAAAGAAGGCACTCTCTTTTGATAGGCCTGAAGCTGATAGAAACCTTGGAATGTACTTCGTTTCTTCAGTGAAAGAGGGTCAGTTACTCCACATTGTGGACAGCCACATAATAGATGAGGCAAATGCTGAGCAACTAATGGAAGTTGCCAATATTGCAAAAAGGTGTTTAGGGGTGAAGGGAGAGGAAAGACCCACCATGAAAGAAGTGGCAATTGAACTTGAGGGAATAATAGTTATGGAAAAGCACCGATGGGAAAGAGACAATTTGTGTTCAGAAGAGACTGAAAACTTGCTCATAACAGCACCTTCTATTTTCAATGTTGAAGATGGTGTTGGTGGAAGGGGCATTAGTCATTATGGCTATGTTAGCTTGAACCAGATTTCAATGTCGTTCGGTGGTGGAAGATGA 2262 0.4434 MDVHHFKQLLMLLLVAILFAAKVTATEPISKPNCPTKCGSVTIPFPFGTTKGCSLDSTFLINCNQTSSSLHTPFLPQSNRSVLNISLNGELRVAWPVASYCYANRDKLVNQTVPEVNLTRFHVSSSRNKLTVVGCDTAGAVVGFDSDQGKNYTTGCVSLCYSLHDIETNGSCSGTGCCDTSIPQGLSKFRYATAAAFNNTPVLDFNPCGYAFLVENGAYNFSSTDLVRFEKTEFPVVLDWAVGNQTCQQAQKEVSSYACKAQNSACYNSKEGTGYLCNCSRGFRGNPYLLHGCQDVDECMESNGCVDGATCNNFPGSYNCSCPKGYEGDGKNDGTRCSPKSRKQIILIVVLSASVSVMALLVGSFYGYWVLRKRKHIKLKEQFFQQNGGLLLQQQIARHNGSTEMAKVFTVQELKEATNNFDESKILGQGGQGTVYRGLLLDNRTVAIKKSKISDQNQVEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFILNGTIHEHLHQQSHALKLTWKTRLRIAAETAGALAYLHSATSTPIIHRDVKTTNILLDHNLTAKVSDFGASRIIPLDQYMLTTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEADRNLGMYFVSSVKEGQLLHIVDSHIIDEANAEQLMEVANIAKRCLGVKGEERPTMKEVAIELEGIIVMEKHRWERDNLCSEETENLLITAPSIFNVEDGVGGRGISHYGYVSLNQISMSFGGGR* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01979 753 ProSitePatterns Calcium-binding EGF-like domain signature. 295 320 IPR018097 GO:0005509
Rops10g01979 753 SMART serkin_6 421 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01979 753 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Rops10g01979 753 FunFam Wall-associated receptor kinase 2 245 293 - -
Rops10g01979 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Rops10g01979 753 SUPERFAMILY EGF/Laminin 294 331 - -
Rops10g01979 753 ProSiteProfiles EGF-like domain profile. 295 338 IPR000742 -
Rops10g01979 753 Gene3D Phosphorylase Kinase; domain 1 388 496 - -
Rops10g01979 753 SUPERFAMILY Protein kinase-like (PK-like) 404 697 IPR011009 -
Rops10g01979 753 Gene3D Transferase(Phosphotransferase) domain 1 498 714 - -
Rops10g01979 753 Pfam Wall-associated receptor kinase galacturonan-binding 34 92 IPR025287 GO:0030247
Rops10g01979 753 Pfam Calcium-binding EGF domain 295 337 IPR001881 GO:0005509
Rops10g01979 753 CDD EGF_CA 295 329 - -
Rops10g01979 753 FunFam Fibrillin 2 294 333 - -
Rops10g01979 753 SMART egf_5 298 338 IPR000742 -
Rops10g01979 753 SMART egf_5 246 294 IPR000742 -
Rops10g01979 753 Gene3D Laminin 243 337 - -
Rops10g01979 753 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 695 IPR045274 GO:0007166
Rops10g01979 753 SMART egfca_6 295 338 IPR001881 GO:0005509
Rops10g01979 753 Pfam Protein tyrosine and serine/threonine kinase 424 689 IPR001245 GO:0004672|GO:0006468
Rops10g01979 753 FunFam Wall-associated receptor kinase 2 391 496 - -
Rops10g01979 753 FunFam Wall-associated receptor kinase 2 497 714 - -
Rops10g01979 753 CDD STKc_IRAK 427 694 - -
Rops10g01979 753 ProSiteProfiles Protein kinase domain profile. 421 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01979 Rops-Chr10 36202368 36206911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01979 12 716 Receptor kinase-like Gene Family AT1G21230 48.257 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops10g01979 PK_Tyr_Ser-Thr 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01979 - - gmx:100798027 1095.49