LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01978	ATGGTGGAAGATGGAGCCTACAACTTCGCCTCCACAGACCTCGTCACGTTTGAGAAGACGGAGTTTCCTGTGGTGCTGGAATGGGCAGTGGGGAACCAAATGTGCCAACAAGCGCAGAAGGATGTTTCAAGTTATGTGTGTAAATCAGAGAACAGTCAATGTTTCGAATCACCGGAGGGACCTGGTTACCTTTGCAACTGCTTTGATGGTTTTCGGGGAAACCCTTACCTCCTTCATGGCTGCGAAGAATTGATGGATTATCGTTTAGATGTTGATGAATGCTTGGAATCCGACGGCTGCGTTGATGGGGCGACATGCATGAACCTTCCTGGGAGCTACAATTGTTCGTGCCCGGAAGGATATGAAGGAGATGGAAAAAATGATGGAACAAGATGCAGTCCCAAATCCAGTACCAATTCCGGGAAAGAGATCATACTGATAGTTGTTTTGAAGACAGAAGTTCCCTTGCTCGTTTATGAATTCATTCCCAATGGTACTATTTATGAGCATCTTCATGACCAAAGCCATTCTTTAAAACTTACATGGAAAGCAAGATTGAGAATAGCAACAGAAACTGCTGGAGCCCTGGCTTACTTGCATTCTGCTACTTGTACACCAATCATACACAGAGATGTGAAAACTAGAAATATACTACTTGATCATAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCTAGAATCGTTCCTCTTGATCAAAAGCTAATGACAGGAAAGAAGGCACTCTCTTTTGGCAGGCGTGAAGCTGATAGAAACCTTGCAGTATACTTTGTTTCTTCAGTGAAAGAGGATGAGGCAAAATTTGAGCAACTAGCGGAAGTTGCTAATATTGCGATAAGGTGTTTAAGAATGAACGGAGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATAATAGTTATGGAAAAGCACCGATGGGAAAGAGTCCATTTGTGTCCAGAAGAGACGGAAAACTTGCTCAAAACAGTGCCATCTGTTTTCAATGTTGAAGGTGGCGTTGGTGGAAGTGGTATAAGTTGTTATGGATTTGATAGCTTGAACCAGATTTCGATGTCATTCGGCGGAGGAAGATGA	1107	0.4327	MVEDGAYNFASTDLVTFEKTEFPVVLEWAVGNQMCQQAQKDVSSYVCKSENSQCFESPEGPGYLCNCFDGFRGNPYLLHGCEELMDYRLDVDECLESDGCVDGATCMNLPGSYNCSCPEGYEGDGKNDGTRCSPKSSTNSGKEIILIVVLKTEVPLLVYEFIPNGTIYEHLHDQSHSLKLTWKARLRIATETAGALAYLHSATCTPIIHRDVKTRNILLDHNLTAKVSDFGASRIVPLDQKLMTGKKALSFGRREADRNLAVYFVSSVKEDEAKFEQLAEVANIAIRCLRMNGEERPTMKEVAMELEGIIVMEKHRWERVHLCPEETENLLKTVPSVFNVEGGVGGSGISCYGFDSLNQISMSFGGGR*	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01978	368	SUPERFAMILY	Protein kinase-like (PK-like)	151	317	IPR011009	-
	Rops10g01978	368	ProSiteProfiles	Protein kinase domain profile.	1	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01978	368	Pfam	Protein tyrosine and serine/threonine kinase	148	243	IPR001245	GO:0004672\|GO:0006468
	Rops10g01978	368	SUPERFAMILY	Growth factor receptor domain	30	122	IPR009030	-
	Rops10g01978	368	ProSitePatterns	Calcium-binding EGF-like domain signature.	90	115	IPR018097	GO:0005509
	Rops10g01978	368	Gene3D	Transferase(Phosphotransferase) domain 1	144	253	-	-
	Rops10g01978	368	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	242	310	IPR045274	GO:0007166
	Rops10g01978	368	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	207	219	IPR008271	GO:0004672\|GO:0006468
	Rops10g01978	368	Pfam	Calcium-binding EGF domain	90	132	IPR001881	GO:0005509
	Rops10g01978	368	FunFam	Fibrillin 2	87	128	-	-
	Rops10g01978	368	SMART	egf_5	93	133	IPR000742	-
	Rops10g01978	368	SMART	egf_5	34	82	IPR000742	-
	Rops10g01978	368	Gene3D	Laminin	89	133	-	-
	Rops10g01978	368	ProSiteProfiles	EGF-like domain profile.	90	133	IPR000742	-
	Rops10g01978	368	SMART	serkin_6	113	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01978	368	SMART	egfca_6	90	133	IPR001881	GO:0005509
	Rops10g01978	368	CDD	EGF_CA	90	124	-	-
	Rops10g01978	368	SUPERFAMILY	EGF/Laminin	90	126	-	-
	Rops10g01978	368	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	106	117	IPR000152	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g01978	Rops-Chr10	36180180	36188058	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g01978	145	362	Receptor kinase-like Gene Family	AT1G21240	40.892	7.88e-56	188

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Rops10g01978		PK_Tyr_Ser-Thr	1.2e-17	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g01978	-		-	vum:124835050	266.544