Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01966 ATGGGCACTGAGGATGGAGCGAGTGATGCTGATAACACTGAATGTGCTGAAAGAGTTCAGTGTTTGAAAAACGAACCCATTTATAATGGGGTAGCAATTGCAAATGGGAATTATGTTACTGAAGAGACTCAGCACTTTAAAAGTGGATCAGTCAGTGATGGGGTGGAAATTGTAGATGGGAATTATGCTACTGAAGAGGCTCAACACTTGAAAAATGAAACCATGAATAATGTGGTGGCTTGTACTGATGGAAATGGTGTTACTGAAGAGGCTGGACTTTTCAAAAGTGAAGCCATCAGTAATGGGGTGGCAATTGCAGATGGGTTTGATTCTGCTGACGGGGACTCTGCTGGACTTGAATGTCTTCGAACTTATAAGAGGCGTAAGCACGTTAAGTCAAGTTCAAAAAGCAAAGTTCAGGATGGCTGCAGAGAATGTGTGGAAACTACAAGTCATACAGCTGACCAGGTTGTGAAGGAACCTAGTGATGTAGCTTTAGGCAATACTTCAGATGATTATTCCCATGGACATTGGGGAAATGTTGTATTAAAGCATTTATATCACTCATTAGGTGATGACAGTGGCGCCTTAAAGGGGTGCATAAGGGAAGCACTAATTCATCATCCTAATATTAATTGTGCCACTACTGTTATGGAAACTTTTAAAGTTGACAAAGATGGACAAGAATGCTCTTCGCAATTCGAGTCATTGTCTCATAGAACACAGAGTGAAGCTAATGGGCATGCAAATATCATGCACAATGGATGCTCTAGTGAACCACATGGCCTTGGTGTGACTGAGATGTGTCAACGTGTGCTCTGTAATATCTTAACCTCAGAAAAATTCAGTTCATTATGTAAGGCTTTACTTGAAAATTCCCAAGGAGTGAAGCCTGAAAATGTATTTGACTTTAGTGTCGTGAACTCAAGGATGAAGGAGGAAGCTTATGAACAGTCACCGACGCTTTTCTTGTCAGATATTCAACAGGTTTGGAAAAAGCTTCAAGACACTGGTAACGAGATTGTTGCTCTTACCAAGAGCCTCTCCAACATGTCAAGAACTTCCTACTGTGAGCTGGTGGGCATTAGAGCACAGAGCACATTTGAAAATGAAAAGCAAGTGTTCAACAACCGGGAATCGGACTCTCGCGTGAAACCAGAACAGGCAGAAGAATGTGCTATGTATAAAATTTGCAGTTGCAGGTGCTGTGGAGACAAGGCAGATGGCACAGACTGTTTGGTTTGTGATTCATGTGAGGGAATGTACCATGTGTACTGTATTGAGCCTGCAGTGAAAGAAATACCCCACAAAAGCTGGTATTGCGCCAATTGTACTGCTAGTGGCATTGGATCTTCGCATGATAATTGTGTGGTATGTGAAAGGTTGAGTGACGCAAAGACCCTGAACAATGTAATTGGTGATGAAAGCTCCCCTACGGATGAGGAAACACTAAATGAATGTGAAGAGAATTCAAATTGCACCTATGATGGGATTCAAGTATCCATAGGTGGGAGAAAAACACCTAAGTGCAAAATGTGCGGAAATGAAGTGGATGGTGAAGAAGCAAAAATATGTGGACACCCTTTTTGCTCCAATAAATACTACCATGTGAGGTGTCTGACAAGTAAGCAGTTAAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCCGAGTTTGCTTTACTGATCAAGATGATGATAAGATTGTCCTCTGTGATGGTTGTGATCATGCATACCACATCTATTGCATGAAACCTCCACACACTTCTATTCCAAGAGGAAAATGGTTCTGCAGAAAATGTGATACTGGACTCAAAGCAATACACCAGGCAAAAAAGGCATATGAGAGCAACAAGCCAAAAACTGGTCAAGATGTTTTGAAGCCCAATGGTAATCTTCAAAAGAAATGCAACAGTAAACGCGTACGAGAATTGGAAACAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAAGAGAACTTGGCTACAGTCCAAATTGATTCACAGAGAACATGA 2040 0.4152 MGTEDGASDADNTECAERVQCLKNEPIYNGVAIANGNYVTEETQHFKSGSVSDGVEIVDGNYATEEAQHLKNETMNNVVACTDGNGVTEEAGLFKSEAISNGVAIADGFDSADGDSAGLECLRTYKRRKHVKSSSKSKVQDGCRECVETTSHTADQVVKEPSDVALGNTSDDYSHGHWGNVVLKHLYHSLGDDSGALKGCIREALIHHPNINCATTVMETFKVDKDGQECSSQFESLSHRTQSEANGHANIMHNGCSSEPHGLGVTEMCQRVLCNILTSEKFSSLCKALLENSQGVKPENVFDFSVVNSRMKEEAYEQSPTLFLSDIQQVWKKLQDTGNEIVALTKSLSNMSRTSYCELVGIRAQSTFENEKQVFNNRESDSRVKPEQAEECAMYKICSCRCCGDKADGTDCLVCDSCEGMYHVYCIEPAVKEIPHKSWYCANCTASGIGSSHDNCVVCERLSDAKTLNNVIGDESSPTDEETLNECEENSNCTYDGIQVSIGGRKTPKCKMCGNEVDGEEAKICGHPFCSNKYYHVRCLTSKQLKSYGHCWYCPSCLCRVCFTDQDDDKIVLCDGCDHAYHIYCMKPPHTSIPRGKWFCRKCDTGLKAIHQAKKAYESNKPKTGQDVLKPNGNLQKKCNSKRVRELETGGGMDMLLTAANTLNFEENLATVQIDSQRT* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01966 679 ProSiteProfiles Zinc finger PHD-type profile. 397 447 IPR019787 -
Rops10g01966 679 PANTHER OS02G0192300 PROTEIN 315 467 - -
Rops10g01966 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 609 IPR013083 -
Rops10g01966 679 SUPERFAMILY FYVE/PHD zinc finger 558 609 IPR011011 -
Rops10g01966 679 Gene3D - 299 447 - -
Rops10g01966 679 FunFam PHD finger protein EHD3 isoform A 287 448 - -
Rops10g01966 679 SMART PHD_3 399 445 IPR001965 -
Rops10g01966 679 SMART PHD_3 561 604 IPR001965 -
Rops10g01966 679 SMART PHD_3 509 558 IPR001965 -
Rops10g01966 679 SUPERFAMILY FYVE/PHD zinc finger 396 446 IPR011011 -
Rops10g01966 679 ProSiteProfiles Zinc finger PHD-type profile. 556 606 IPR019787 -
Rops10g01966 679 Pfam PHD-finger 400 446 IPR019787 -
Rops10g01966 679 Pfam PHD-finger 559 604 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01966 Rops-Chr10 35866032 35873669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01966 558 626 C2H2 Transcription Factor Family AT3G01460 39.130 1.59e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops10g01966 PHD 1.6e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01966 - - cam:101505792 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01966 10 35866032 35873669 Rops10g01966 10 35866032 35873669 ECH
Rops9g02492 9 46612908 46626877 Rops10g01966 10 35866032 35873669 PCT