Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01965 ATGCCGCCACGTCGAGGCTCTGCTTCACCGGCGAGTCAGTCGTCGGAGTCGGAGAGCAATAGCTATAGCGACAGCGATGATAGCATGATGTTCCAGTGCCTTTGTTGCAAGAAGGACTACGACGATGATTTCGCAACATGCAAGGAGTGCTACAACAAAGCCAAACGTCAAATTGAAGAATGGAAGTCAAAGGTTTCATTCCTCACTATCTCTTCTCCCCTCGATGCTCCCTCATCCACCACCGATCTCATCCTCGTTCCCTCTCTTGACGCTTCAGCTCGCTATGTTCCCGCTCACAAGGCTGTTCTGGTTAGTCGCTCTCCAGTTTTTAAAGCCATGCTGGAGAATGATATGGAGGAAAGCCGGAGTGGTACCATCAATATTACTGACGTATCATATGATACTCTTTTTGCTTTTGTCAACTATTTATACACTGCCGAAGCATGCCTTAATGATAACCAAATGGCATGTAACTTATTAGCTTTAGCAGAGAAGTATCAGGTAAAGCATCTTAAGACAAATTGTGAGAATCATTTGATAGCCAAACTGACTTGGGAGAAAGCTGTTGCAAACTATGCCTTTGCACGTCAACACAATGCCAACCCATTGTTAGATGCAGCCTTGGCATTGATCATTGACAACATGGACAACCTTACTAGAAATGAAGATTATATGGAGCTGGTGGATTGTAATCCTCGTCTTATCATTGAAATATATGAAGCATATCATGCCAGACAGGGTAATACTGCTGTCACCCTGACAAAGCGTAGGAAACGAACTTAG 783 0.4432 MPPRRGSASPASQSSESESNSYSDSDDSMMFQCLCCKKDYDDDFATCKECYNKAKRQIEEWKSKVSFLTISSPLDAPSSTTDLILVPSLDASARYVPAHKAVLVSRSPVFKAMLENDMEESRSGTINITDVSYDTLFAFVNYLYTAEACLNDNQMACNLLALAEKYQVKHLKTNCENHLIAKLTWEKAVANYAFARQHNANPLLDAALALIIDNMDNLTRNEDYMELVDCNPRLIIEIYEAYHARQGNTAVTLTKRRKRT* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01965 260 Gene3D - 184 260 - -
Rops10g01965 260 Gene3D Potassium Channel Kv1.1; Chain A 53 183 IPR011333 -
Rops10g01965 260 MobiDBLite consensus disorder prediction 1 26 - -
Rops10g01965 260 SMART BTB_4 81 183 IPR000210 GO:0005515
Rops10g01965 260 Pfam BTB/POZ domain 92 182 IPR000210 GO:0005515
Rops10g01965 260 MobiDBLite consensus disorder prediction 7 26 - -
Rops10g01965 260 CDD BACK 192 227 - -
Rops10g01965 260 CDD BTB_POZ_ZBTB_KLHL-like 81 166 - -
Rops10g01965 260 ProSiteProfiles BTB domain profile. 81 152 IPR000210 GO:0005515
Rops10g01965 260 PANTHER SPECKLE-TYPE POZ PROTEIN 79 249 - -
Rops10g01965 260 SUPERFAMILY POZ domain 92 180 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01965 Rops-Chr10 35854162 35855097 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops10g01965 BTB 1.2e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01965 K10523 - gmx:100794118 282.722