Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01960 ATGCAATCACGGCGGTGTACGACGTCAACGGCGAGGCAGTCGTCAGTGTTGGAGAACCTCAGGATGCGGTGCCCTTCATGCGAGGAGGATTATGACGCTCATGGCGCCAGAACTTGTAAAGAGTGCTACAAAAAAGCCAAGCGTCAGCTCCAAGACTTGAAATTGAAGGTTGAATTCCTCACTCTCACTTCTCCCTTCGATATTGTCCTTGTTCCCTCTGCTGATGCTTCTGCTTCCTCTGTTCCCGCTCACAAGGCCGTTCTGGTTAGTCGCTCTCCAGTTTTCAAAGCCATACTTGAGAATAACACGGAGGAAAGCCAGAGTGGCATCATCAAGATCACTGACGTAACATATGATACTCTTCGTGCTTTTGTTCACTATTTATACACTGCGGAAGCATGCCTTAATAATGAATTGGCATGTAACCTATTAATTCTAGCAGAAAAGTATAAGGTGCTGCATCTCAAGGCATTTTGTGAGAAGCATTTGATCGCCCAACTGAATTAG 507 0.4615 MQSRRCTTSTARQSSVLENLRMRCPSCEEDYDAHGARTCKECYKKAKRQLQDLKLKVEFLTLTSPFDIVLVPSADASASSVPAHKAVLVSRSPVFKAILENNTEESQSGIIKITDVTYDTLRAFVHYLYTAEACLNNELACNLLILAEKYKVLHLKAFCEKHLIAQLN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01960 168 SUPERFAMILY POZ domain 67 164 IPR011333 -
Rops10g01960 168 Coils Coil 36 63 - -
Rops10g01960 168 PANTHER SPECKLE-TYPE POZ PROTEIN 47 168 - -
Rops10g01960 168 SMART BTB_4 66 167 IPR000210 GO:0005515
Rops10g01960 168 ProSiteProfiles BTB domain profile. 66 137 IPR000210 GO:0005515
Rops10g01960 168 Gene3D Potassium Channel Kv1.1; Chain A 30 168 IPR011333 -
Rops10g01960 168 CDD BTB_POZ_ZBTB_KLHL-like 67 150 - -
Rops10g01960 168 Pfam BTB/POZ domain 66 166 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01960 Rops-Chr10 35768599 35769322 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops10g01960 BTB 4.4e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01960 K10523 - vvi:100243658 186.037