Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01959 ATGGAGAAAGCTTGTCTTCAACACAAGGCAGTAGTGACACAGAAGCTGAGAGAGAAGACCCATCGAATCAATCAATCAGAAAGGAGAAAAAGAATACCACTGCGGCAGTGCATGGCGTCAGCGGCGAGGCAGTTGTTGGAGTTGGAGAACTTCACGATGTGGTGCCCTTCGTGCGAGGAGGAGTACGACGCTCGCGGCGCCAGAATTTGCAAGGACTGCTACAACAAATCCAAGCGTCAGCTCCTAGACTTGAAGTCGAAGGTTGCATTCCTCACTCTCTCTTCTCCCTTCGATATCGCCCTTGTTCCCTCCGCTGATGCTTCTGCTTCCTGCGTTCCCGCTCACAAAGTCGTTTTGGTTAGTCGCTCTCCAGTTTTCAAAGCCATGCTTGACAATAACATGGAGGAAAGCCTGAGTGGCATCATCAAGGTTACTGACGTAACATATGATACTCTTCGTGCTTTTGTTCACTATTTATACACTGCGGACGCATGCCTTAATAATGAATTGGCATGTAACCTATTAATTCTAGCAGAAAAGTATAAGGTGCAGCATCTCAAGGCATATTGTGAGAAGCATTTGATCACCAAACTGGATTGGGAGAAAGCTCTTGCAAACTATGCCTTTGCAAAACAACACAATGCCAACCAATTGCTGGATGCAGCCTTGGCAATGATCATTGACAACATGCACCTCCTTACTAAAAGTAAAGATTATAAGGAGCTCATGGATAGTAATCCTTGTCTTATAGTCGAAATATACGAAGCATACATTGCCAAACTGGTTAATATGAAACTCCCTCCATTTAGGACATGA 816 0.4498 MEKACLQHKAVVTQKLREKTHRINQSERRKRIPLRQCMASAARQLLELENFTMWCPSCEEEYDARGARICKDCYNKSKRQLLDLKSKVAFLTLSSPFDIALVPSADASASCVPAHKVVLVSRSPVFKAMLDNNMEESLSGIIKVTDVTYDTLRAFVHYLYTADACLNNELACNLLILAEKYKVQHLKAYCEKHLITKLDWEKALANYAFAKQHNANQLLDAALAMIIDNMHLLTKSKDYKELMDSNPCLIVEIYEAYIAKLVNMKLPPFRT* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01959 271 SMART BTB_4 97 198 IPR000210 GO:0005515
Rops10g01959 271 CDD BACK 207 242 - -
Rops10g01959 271 SUPERFAMILY POZ domain 110 195 IPR011333 -
Rops10g01959 271 CDD BTB_POZ_ZBTB_KLHL-like 111 181 - -
Rops10g01959 271 ProSiteProfiles BTB domain profile. 97 168 IPR000210 GO:0005515
Rops10g01959 271 PANTHER SPECKLE-TYPE POZ PROTEIN 94 260 - -
Rops10g01959 271 Pfam BTB/POZ domain 109 197 IPR000210 GO:0005515
Rops10g01959 271 Gene3D - 199 270 - -
Rops10g01959 271 Gene3D Potassium Channel Kv1.1; Chain A 73 198 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01959 Rops-Chr10 35763279 35764367 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops10g01959 BTB 7.9e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01959 K10523 - gmx:100794118 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01959 10 35763279 35764367 Rops10g01959 10 35763279 35764367 ECH