Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01958 ATGCCACCGCGGCGGTGCACGGCGAGGCATTTGTCGGAGTTGGAAAGCGACACCGATTACGATGACGACGAGAACCTCACGATGCGGTGCCTTTCCTGCGAGGAGGACTACGATCCTGACGACGCCGGAACTTGCAAGGAGTGCTACGACGAAGCCAACGAAACGGAGGAAGAGCTCAAGCGCGAGATCCAAGACTTGAAGTCGAAGGTTTCATTCCTCACTCTCTCTTCTCCCTTCGATGTTCCTTCCTCCACCACCGATATCGTTCTCGTTCCCTCCGCTGATGCTTCCGCTTCCTCTGTTCCCGCTCACAAGGCCGTTCTGGTTAGTCGCTCTCCAGTTTTCAAAGCCATGCTTGAGAATGATATGGAGGAAAGCCGGAGTGGCACCATCAAGATTAGTGATGTTTCATATGATGCTCTTCGTGCTTTTGTTAACTATTTATACACTGCTGAAGCATGCCTTGATAACCAAATGGCTTGTAACCTGTTAGTTCTAGCAGAAAAGTATCAGGTGAAGCACCTTAAGACATATTGTGAGAAGCATTTGATTGCCAAACTGAATTGGGAGAAAGCTCTTGCAAACTATGCCTTTGCACACCAACACAACGCCAACCAATTGTTAGATGCAGCCTTGGCAGTGATCATTGACAACATGGACAGCCTTACCAAAAATGAAGATTACATGGAGCTGGTGGATAGTAATCCTCGTCTTGTTGTCGAAATATATGAAGCATATCTTGCCAAACAGGTTAATACTGCTGCCACCCTTAAGCTATAG 780 0.4782 MPPRRCTARHLSELESDTDYDDDENLTMRCLSCEEDYDPDDAGTCKECYDEANETEEELKREIQDLKSKVSFLTLSSPFDVPSSTTDIVLVPSADASASSVPAHKAVLVSRSPVFKAMLENDMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDNQMACNLLVLAEKYQVKHLKTYCEKHLIAKLNWEKALANYAFAHQHNANQLLDAALAVIIDNMDSLTKNEDYMELVDSNPRLVVEIYEAYLAKQVNTAATLKL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01958 259 SUPERFAMILY POZ domain 85 184 IPR011333 -
Rops10g01958 259 CDD BACK 196 231 - -
Rops10g01958 259 Coils Coil 45 76 - -
Rops10g01958 259 CDD BTB_POZ_ZBTB_KLHL-like 86 170 - -
Rops10g01958 259 Gene3D - 189 258 - -
Rops10g01958 259 Gene3D Potassium Channel Kv1.1; Chain A 50 188 IPR011333 -
Rops10g01958 259 FunFam BTB/POZ domain-containing protein 189 258 - -
Rops10g01958 259 ProSiteProfiles BTB domain profile. 86 157 IPR000210 GO:0005515
Rops10g01958 259 SMART BTB_4 86 187 IPR000210 GO:0005515
Rops10g01958 259 Pfam BTB/POZ domain 85 186 IPR000210 GO:0005515
Rops10g01958 259 PANTHER SPECKLE-TYPE POZ PROTEIN 44 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01958 Rops-Chr10 35738067 35740480 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops10g01958 BTB 1.7e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01958 K10523 - gmx:100794118 355.91