LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01954	ATGCTGCAAACTGGTTCACCCGGAGAAGCCATCGACGGTGGCTCCGGTGGCCGGACGGTGGTGGTGGGGGTCAAGCTTGACTCTCCCAGCAAAGAACTGCTGACGTGGGCTTTGGTCAAAGTTGCTAAGCCTGGTGATACCGTTGTTGCTCTGCATGTTCTCAGCAACCATGGAATTGGGAATGGAGATACGAAATCGTCGCTGCTTTCGCTAATCAAGGCATTTGACTCTGTTCTCTCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGGTCTAAAGCTCAAAGTTTGCACTGGTTCATCAGTGAAGAAAATTTTGGTTAGAGAAGCGAATGCTTATTCTGCAACCCATGTTGTGGTTGGAACTTCTCAAGGCTTCCATAAAATCCGATCATCTACCTCTGTAGCTAAGTACTGTGCTAGCAAGTTATCCAAGGATTGCTGTGTTCTTGCTGTTAACAACGGGAAAGTTGTGTTCAAGCGTGGTAGCTCACCACCAAATGTTGCTGACTTACAAGGGATTGATCGTTGTCACAGAAATGGTTTGCTTGGTTCAATTCATTCGACACTCAGCAAGAGTACAAAAGTACTAAGTGATGATGACAATACAGGAAAGGATGCTGATGAGGGAAATGGCAGAATTTCGGATCATAGTTTAGCTAAGGTTCTTCTGGATTCTACAGAAATTGATAGGAGAAAGAGATGCTCAATTTGTGGCTCAACCCAGGCATTGCCGGACACTTCTTGCCACCAATCTGCCGAAGGGTCTTCTGATGATGGTGGCAGTGAGAATTCTTTGGCTATAGTTCCTGTACAGACCATTGATGTTGGACAACCTGAATTGAAACCAGGTTGGCCACTACTACACCGAAGAATTTTATCAGACAGACAACTTCCCGATAGATCATTGATGCGCCACCAGATCTCTGCGGTCCAGTGGGCAATGAGGTTGCCCTGTAGAAATCTTTCATATGCTGCAGATCATGATAAAAAACCTAACATTTGTGGTCAAGGTCAGGATCAACCTGTGGCTTTAGATGGTGAAAGTGGTGCTCTTGTTCCAGTAGATGCTGAAACAGGGATTGCTTCTTCGCCTGAATGCAATTCAAGAAGCATTCCTAAAGAATTGGAAGGCCTTCATGAGAAATACTCATCAACTTGCAGATTGTTTGAGTATCAAGAACTTGTATCAGCTACATCAAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGTAGCAAGGTTTATAGAGGATGCCTTCCTGATGGCAAGGAACTTGCTATCAAGATCCTAAAGCCTTCTAATGATGTTTTGAAGGAGTTTCTTTCGGAAATAGAAATTATCACTACATTGCATCACAAAAACATTATTTCCCTCCTTGGGTTCTGCTTTGAGAATGACAATCTTCTTCTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGGGAATAAGAAAAATCCATGCATGTTTGGTTGGACCGAGAGATATAAGGTAGCAATGGGTGTTGCTGAGGCTTTGGATTGTCTGCATTGTAAAGATGGTCAACCTGTGATCCATCGGGATGTAAAATCATCAAATGTATTATTATCTGAGGATTTTGAGCCCCAGCTCTCTGATTTTGGACTGGCAAAGTGGGCATCAACTTCGTCATCACATATAACCTGCACAGATGTTGCTGGAACCTTTGGTTATTTGGCTCCAGAATACTTCATGTATGGCAAAGTAAATGATAAAATCGATGTCTATGCTTTTGGCGTGGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCAAAAGGTCAAGAGAGTATCATTATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCCAATTTGGGTGACAACTATGATCATGAGGAGATGGAAAGGATGGTCTTAGCAGCCACTCTCTGTATCAGACGTGCTCCAAAAGCTAGGCCTCAAATGAGCCTTATTTTGAAGCTTCTTCAAGGTGATGCTGATGCAATCAAGTGGGCAAAGATAGAAGTTAATGCTTTGGAAGCACTGGAAATGCTCGATGATGAAGCGTGTCCGCCTAGTAATATACAGTCACATCTTAATCTTGCACTGCTTAATGTGGAGGATGACTCACTCTCCATGTCCAGTGTTGTGCAAAGTGTCTCATTGGAGGACTACTTGAGAGACAGGTGTAGCCGTTCATCAAGCTTTGACTGA	2250	0.432	MLQTGSPGEAIDGGSGGRTVVVGVKLDSPSKELLTWALVKVAKPGDTVVALHVLSNHGIGNGDTKSSLLSLIKAFDSVLSVYEGFCNLKQVGLKLKVCTGSSVKKILVREANAYSATHVVVGTSQGFHKIRSSTSVAKYCASKLSKDCCVLAVNNGKVVFKRGSSPPNVADLQGIDRCHRNGLLGSIHSTLSKSTKVLSDDDNTGKDADEGNGRISDHSLAKVLLDSTEIDRRKRCSICGSTQALPDTSCHQSAEGSSDDGGSENSLAIVPVQTIDVGQPELKPGWPLLHRRILSDRQLPDRSLMRHQISAVQWAMRLPCRNLSYAADHDKKPNICGQGQDQPVALDGESGALVPVDAETGIASSPECNSRSIPKELEGLHEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSKVYRGCLPDGKELAIKILKPSNDVLKEFLSEIEIITTLHHKNIISLLGFCFENDNLLLVYDFLSRGSLEENLHGNKKNPCMFGWTERYKVAMGVAEALDCLHCKDGQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESIIMWASPILNSGKVLQLLDPNLGDNYDHEEMERMVLAATLCIRRAPKARPQMSLILKLLQGDADAIKWAKIEVNALEALEMLDDEACPPSNIQSHLNLALLNVEDDSLSMSSVVQSVSLEDYLRDRCSRSSSFD*	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01954	749	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	17	154	-	-
	Rops10g01954	749	PANTHER	OS08G0249100 PROTEIN	85	685	IPR046958	-
	Rops10g01954	749	ProSitePatterns	Protein kinases ATP-binding region signature.	409	431	IPR017441	GO:0005524
	Rops10g01954	749	Pfam	Protein kinase domain	407	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01954	749	Gene3D	Transferase(Phosphotransferase) domain 1	478	692	-	-
	Rops10g01954	749	CDD	USP_Like	19	153	-	-
	Rops10g01954	749	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	372	477	-	-
	Rops10g01954	749	SUPERFAMILY	Protein kinase-like (PK-like)	384	674	IPR011009	-
	Rops10g01954	749	CDD	STKc_IRAK	409	676	-	-
	Rops10g01954	749	ProSiteProfiles	Protein kinase domain profile.	403	681	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01954	749	FunFam	Putative receptor-like serine/threonine-protein kinase	478	690	-	-
	Rops10g01954	749	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	524	536	IPR008271	GO:0004672\|GO:0006468
	Rops10g01954	749	MobiDBLite	consensus disorder prediction	244	265	-	-
	Rops10g01954	749	Gene3D	Phosphorylase Kinase; domain 1	368	477	-	-
	Rops10g01954	749	Gene3D	HUPs	17	155	IPR014729	-
	Rops10g01954	749	SMART	serkin_6	403	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops10g01954	749	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	18	155	-	-
	Rops10g01954	749	Pfam	Universal stress protein family	18	150	IPR006016	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g01954	Rops-Chr10	35690616	35694519	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g01954	390	675	Trihelix Transcription Factor Family	AT1G68690	44.966	9.92e-76	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Rops10g01954		Pkinase	2.1e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g01954	-		-	pcin:129303222	1038.1