Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01952 ATGGGCTCGTGTGGGGAATCTGGTATCGTTGTTGATCCCTCAGGCGGGTCTGTTATTGAGCAGCATTTGTGCTCAGAGATTCCGTTGCAGTTAGTTGCTGGTTCAGAAGAAGCTTGCAATGTGTTGGACTCTAATGTTGACCTCTCTGGTATGAATGATGGTTGTATGGGAGAGGGTTCTGCAAGCATTGTTGATGTTACTGAGGGGTCTAGAGATGCTTTGGTAAATGAATGTGTAAATGTTGATATGTCGCAATTGGAGAAAACTTCTGAGGATGATTGTCAGAATTGTTTGGGGATTTGTGGGGAAATTGAAGTTTCCTGCCTAAAAAGTGATGGGTTGTGCTCAGAAGGAAATTTTCAAGATGAACCGTCAGAGTCCATAACCACAAATGATTTGCAGAAGCAATGTGTGCAACATGGTGAGCAGAAGGATGATGAGAGCAACATGGCAGGAGATGATTCGGCAGCCATGGAAGGAAAAAATGATGATGCTGGTTTACTGGCTGATGCTTTCAATTGTGTGCTTGATTTCAGGCATTCTGAAATGTCTTTGGAATCAGAATCCATGAATGAATTGCGAGTTGATGGCAACCAGCAAAACGAGCCAGAGGAAATTATGAATGATACAGATACCTTGTTGAAGGTTGTGGGAAAATGTGATGCTTTAGATGGGATGGAAGCCAATGCTTGCAGGCAGATATCGCCTTCACAGGGTATGGAAGTGCCGTCAGGTGCATTATGTACAGATACAGAGGTAGCGAGCACAAATGATGAACTATGTGATCAAAAAGATGGTGAGGATTGGAATAGTACTTGTGAAGAAAATATCAAAGCTGCTGTTGATAAAGAAATCACTATTAATTCACGTGTACTAGTATCGTCTTCACCAGGTTGCCATGGGACCTTGAGGAGTTCACCTGTAGTTGATTCACTTCATGAGCCCACCCTGCTGGATCCGGGTAGTGAAATGAAGAACAGTATACTGCAAATAGAAGATGATTTCTGTAAATTGAATGACTCTTCCCCAGAGGGAACTACCGACTCTACTTTTGGAAAACCATTTTATCCAGAATCAGGTCAGCCCTCTGTTGTTTTAATCACCAATAGCTCTTCGAAGGATGTGCCTGATCTCCTCTCTAAGGGTGATGACGTTTCCATCAATAATAATAGTGCTGTGGACCATCCTGGAGAGACAAATAATGATGGAAAAGAAGCTGTTACAGTTGATTGTATAACTGAAAGCATACTGTTACCTTCTCAAAGGAACAGTCGAAGAACTAAATTTGGTCGTAAGACACAAACCAAAAAGGCTTCAAGAAAATGCAAGAACAAAGCCAGCATGACACATCCATGTGAGGTTGTGAAGATAAACTCAGAGGCTGCTAGAAAGAAAAGAAGTTGTTTATCCAAACCAGCTCGTTCTTCTATCTGGGGATTGTTGGGGAACATTAAACAGTTATTTCAGCAAGAGACTGAGCTTGAGGTAAGTGAAGCCATATGCCAGGAATTGGGGAAGGCTAGAAGCAAGCGCCAAAGCAGGAAAGCAATTAAGAATGGTGCAAGTTCGAGCTCATTGAGTTCAGTGCAGAAGTATTCTGTTTCAACTTCAACTACTCGTGTTCGTCTAAAGATCAAGATTGGAAAAGAAATTGATTTAAGTTGCTCAAATGTCTTGATTCCAGAGGCTGTTGGGGGCTCGGATTCTGCTTCCTACTTGGAGTCTGATTCAGGCTCTCATAGAGTAGCCAGCAATACTGAAGATAAATTTTCTGAAGTGGCGACTCTGGGCAATCTAGAATCTTTCAAAAATGACCTGGACAAGGATTGTCTTGTTCTAAATGGACAAATTGCAAATACCCACTTAGAAAATACTGAAATAACGGAAAAGTCAGATGGAGATGCAGAGGAACCGTGTCTTACAGTTCCTCCTGAGAAGGTGATTGAAGCATTAGTTGAGCCTATCAATAACAAGGTTATGGATCCTGGAACTTCACCTGATTCAGAAGTTATCAATTCAATTCCAGAAGTCCAGGTTGGAGAAAGACATGAAGAAGATGTACATCATGCTGCTTTAGGTTCTTCTAAGGAGTTCAACCCTAATTTGGATGTTACCATCAGTAAGAGAGGGAAGAAGAAAGACAAGCTAATTTCAGGTAATCGTGTCACTGAAAACGGATCACAAGGACCACCTGGGAATAATAAAGTTAAGCATTCAAAGAATCGCAGACGCAAGAAGAATTGCAGTGATGCGGTTAGCTCTTTGGAATTACCTACTTCCACTGAGATAAGCAAATCAGTAAATAGTAAAGAATTGTCTGCAGAAACATTGCCCCTTTCTGGAGAGATTGAACTTGGAGGCTCCACCAAGGATTTGAAAGTTCAGGGTCATGTGGAAGTTAAGACAACTTGCAAACCATCTGTTGACAATGGACATTCAGAAACCCAGGGTTCTGAGAATTTGCTGTCTTCTGCAAGATCTTTGGGGCGTAAACTACCTAAAAGTCTTAAACCTAGGAAAGTTAGCAAGGCCAAACCTAAAGCTTCTGACTCAGAGAGCAGGAAAAAGACTACTCCTAGATGCAAGGAGAAACAGAAAAAGCCAATTAAGAGTGAAGTCAAGGGAAAAGGTGTCTCTCTTAAAGTTACGTGTGAAGTGGATGATGGCTCACATCCAGCACATGTAGCTGGAAATCATAAGCTAGATGCTGTTGGAAAAATTAATGCCAGTGACAACAGATTATCAGTCAATGTATCTGATTTGGACATGCTGCCTGGTGTTGGTTTGGGAGAGCAGCATCCATCACCACATAATGCATGGGTGCGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTGTGCTTGCAGACCTGATCGATGAAACTAATTGCACCTGGACATGTAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGCCATCCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGATGCCTCTGGTGAAGAAGATGTGTATGAAGACTCCAAAAATTATAAGGAATTGGAATATCGACTGCCATTGGTTTCCCAGGAGTCAACTTTTACCCGTATTTTTACCAATGAGTTTCTGCATCGAAGCTGTAAAACTCAGACTATTGACGAGATAATGGTCTGCCATTGCAAGCCACCCCCAGAAGGCAAGTTGGGCTGTGGGGATGAATGTCTAAACCGGATGCTTAACATTGAATGTGTGCAAGGAACCTGCCCATGTGGGGACTGTTGTTCCAATCAGCAGTTCCAAAAACGCAAGTATGCCAGCCTGAAGTGGTTTAAATGTGGCAAAAAAGGTTATGGACTGAGGGCGCTTGGGAATGTAGCTAAGGGCCAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGACGTGCATGCTTATGAGGCACGGCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTAAATGGCAGTGAGGTGATAGATGCGAGTGCAAAAGGAAACTTGGGGCGCTTCATTAATCATAGCTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATTTGTATTGGACTGTTTGCATTGAGGGATATTAAGCAGGATGAAGAATTAACATTTGATTACAACTATGTAAGGGTTTTCGGTGCCGCTGCCAAAAAATGTTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGCGGCGGTGATCCACTTAATGCTGAACTGATAGTTCAAGGTGATTCAGATGATGAATTTCCTGAACCTGTGATGCTTACTGAAGATGGTGAAATCGAGGACAGTGTACCTATACCCAAGTACTTTGACAATGTTGATACAGAGTCTTCTAAGCATTTGTTAAAAGACAAGGGTGGATTGGACAAGTCTACAACTGCTATACATGCAGATGGTTCTTCAGAGAAAGAGAGTTCTATGAACCCTGCCTCTGCGGTTTCCCTGTTGCACAGCTCAGTTGAAGTTGAAGACTCAAAGGGCAATTTACCGTCTTCTGTTCAAATAGAAGAAATTTCTCAACAAATGGAGGATGTAACAAGTAAACCCATTCCTGCTGTACAACAAGGATATGCAATGGAATCAGAGTCTGTAGACAAAACTTCCTGCATTCAAAGATTAGAGACTACTTCTTCCCTTACAACTGTCAGCAAAGTGTTATCAAATTCTACTGGTAGTAATAAAGAATCCAAGTCTGAAATAGTTGAAGGCAGGAATGATTTCTCAGAGTCACATCTGCTTGTGAAGACTCCTAAACTAAAAGGTTCTGTTAAAAAGGGAAAGGTTCGTGCTAATCCTTCAAATGGCCTTAAAGCTGAGGTGACAGCCAACCAATTGCAGGTGTCATCTATCAAACACAAAAAAACAGTAGAAGGTTCTTCAAATGGACGGTTTGAAGCAGTTCAAGAGAAACTTAGTGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAGCTTTTGCTTCTCACTGTGGCATCAGGTGATAGAAGCAATGGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATCCTTGATGCCCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATATAATTAGCAAAAATGGTTTACAGATGTTACATAACATAATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCAATACTACGAAAGCTTCTTAAGGTTTTGGAGTACCTAGCAGCAGGCAAGATATTGACATCTGAACATATCAACAGTGGTCCTCCTTGTCATGGAATGGAGAGCTTTAGGGAGTCAATGCTGTCTCTAACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCCAGACCTGTCAGAAAACACGGCTATATGGACAGGGATGATAATAGGGTTGAATCCCACAGAAGTTTTAACTGCAACAGATTTTCATCATTACACAATCATAGGCATGAACAGGATTTCAAATCTACAGAAGCAATTGATTGCGGTCAGCAGTCAATGCTTGTGACAACTTCAGCAGATGCTGGTGCCCAGGAAGGCTGCTCTCCAGGGTCTCTAGATAGGGTTGAAATCAACGGGCCAAAAAAACGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAGACAAATTCACATTCTGATGTGGTTATTAGCTCTAATGATGAAAGCCAGAACATTCATGAAGATGTTCCACCAGGGTTTTCGTGTCCAATACGATCATTGAACACTTCACTAAACTCTGGTGATCCTGCTTTGCAAAATGCAAGCCATTCTGGATGTCCCTCTGATTTAGTTATCGGTCATCCAAAAGAGAAATTTAACTCTCGTTTGCCTGTCTCATATGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACCCCTCATGCTGAAATCACCGAGTGTTGGATCACTGCACCTGGCATGCCTTTCAACCCATTTCCTCCACTACCCCCATATCCCCGAGATGACAAAGACTGCCAACCTTCTAATACTACTGATGCCATGGCAATTGATCAGCCTGCTGAAGTTAAGCAGTGGGATACCAGTGGTCGAGTTAATTGCTGCTCAGATGATATGATTCCCAGCACAACCGGTTCTAATCCTGAAGATATGAACCTTCCATGTGAGGACAATAAACACATCACTAAGCGATTGAAGGGTGACTCCAATGATTTGGGGAGGAGGTACTTTAGACAGCAGAAATGGAATAATTCAAAAATACATCGACCATGGTTCAAGAGGAATGCATGGAAATGTAATGGGAACAACCCTAGTGGTGATATGTGCAGTATAGATGTAGGAGATGTACCAAAAGAGTCAAAAGTTACTTGTTCTTCGGAGGATGCAATCTGTAGAGATGAGAATGGTGGCAATAATATTTATTAG 5943 0.4212 MGSCGESGIVVDPSGGSVIEQHLCSEIPLQLVAGSEEACNVLDSNVDLSGMNDGCMGEGSASIVDVTEGSRDALVNECVNVDMSQLEKTSEDDCQNCLGICGEIEVSCLKSDGLCSEGNFQDEPSESITTNDLQKQCVQHGEQKDDESNMAGDDSAAMEGKNDDAGLLADAFNCVLDFRHSEMSLESESMNELRVDGNQQNEPEEIMNDTDTLLKVVGKCDALDGMEANACRQISPSQGMEVPSGALCTDTEVASTNDELCDQKDGEDWNSTCEENIKAAVDKEITINSRVLVSSSPGCHGTLRSSPVVDSLHEPTLLDPGSEMKNSILQIEDDFCKLNDSSPEGTTDSTFGKPFYPESGQPSVVLITNSSSKDVPDLLSKGDDVSINNNSAVDHPGETNNDGKEAVTVDCITESILLPSQRNSRRTKFGRKTQTKKASRKCKNKASMTHPCEVVKINSEAARKKRSCLSKPARSSIWGLLGNIKQLFQQETELEVSEAICQELGKARSKRQSRKAIKNGASSSSLSSVQKYSVSTSTTRVRLKIKIGKEIDLSCSNVLIPEAVGGSDSASYLESDSGSHRVASNTEDKFSEVATLGNLESFKNDLDKDCLVLNGQIANTHLENTEITEKSDGDAEEPCLTVPPEKVIEALVEPINNKVMDPGTSPDSEVINSIPEVQVGERHEEDVHHAALGSSKEFNPNLDVTISKRGKKKDKLISGNRVTENGSQGPPGNNKVKHSKNRRRKKNCSDAVSSLELPTSTEISKSVNSKELSAETLPLSGEIELGGSTKDLKVQGHVEVKTTCKPSVDNGHSETQGSENLLSSARSLGRKLPKSLKPRKVSKAKPKASDSESRKKTTPRCKEKQKKPIKSEVKGKGVSLKVTCEVDDGSHPAHVAGNHKLDAVGKINASDNRLSVNVSDLDMLPGVGLGEQHPSPHNAWVRCDDCHKWRRIPAVLADLIDETNCTWTCKDSSDKAFADCAIPQEKSNAEINAELGLSDASGEEDVYEDSKNYKELEYRLPLVSQESTFTRIFTNEFLHRSCKTQTIDEIMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDCCSNQQFQKRKYASLKWFKCGKKGYGLRALGNVAKGQFLIEYVGEVLDVHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVQGDSDDEFPEPVMLTEDGEIEDSVPIPKYFDNVDTESSKHLLKDKGGLDKSTTAIHADGSSEKESSMNPASAVSLLHSSVEVEDSKGNLPSSVQIEEISQQMEDVTSKPIPAVQQGYAMESESVDKTSCIQRLETTSSLTTVSKVLSNSTGSNKESKSEIVEGRNDFSESHLLVKTPKLKGSVKKGKVRANPSNGLKAEVTANQLQVSSIKHKKTVEGSSNGRFEAVQEKLSELLDGDGGISKRKDATKGYLKLLLLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAAGKILTSEHINSGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRPVRKHGYMDRDDNRVESHRSFNCNRFSSLHNHRHEQDFKSTEAIDCGQQSMLVTTSADAGAQEGCSPGSLDRVEINGPKKRKRKSRWDQPAETNSHSDVVISSNDESQNIHEDVPPGFSCPIRSLNTSLNSGDPALQNASHSGCPSDLVIGHPKEKFNSRLPVSYGMPWSVAQQYGTPHAEITECWITAPGMPFNPFPPLPPYPRDDKDCQPSNTTDAMAIDQPAEVKQWDTSGRVNCCSDDMIPSTTGSNPEDMNLPCEDNKHITKRLKGDSNDLGRRYFRQQKWNNSKIHRPWFKRNAWKCNGNNPSGDMCSIDVGDVPKESKVTCSSEDAICRDENGGNNIY* 1981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01952 1980 ProSiteProfiles Zinc finger CW-type profile. 934 988 IPR011124 GO:0008270
Rops10g01952 1980 ProSiteProfiles SET domain profile. 1100 1217 IPR001214 GO:0005515
Rops10g01952 1980 SMART PostSET_3 1225 1241 IPR003616 -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 1306 1324 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 806 822 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 707 773 - -
Rops10g01952 1980 CDD SET_SETD2 1099 1241 IPR044437 GO:0010452|GO:0046975
Rops10g01952 1980 FunFam Histone-lysine N-methyltransferase 999 1256 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 843 874 - -
Rops10g01952 1980 Pfam CW-type Zinc Finger 940 986 IPR011124 GO:0008270
Rops10g01952 1980 MobiDBLite consensus disorder prediction 425 444 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 140 162 - -
Rops10g01952 1980 SMART shorttest3 1048 1099 IPR006560 GO:0005634|GO:0042054
Rops10g01952 1980 Gene3D SET domain 996 1249 IPR046341 -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 423 445 - -
Rops10g01952 1980 ProSiteProfiles AWS domain profile. 1048 1098 IPR006560 GO:0005634|GO:0042054
Rops10g01952 1980 MobiDBLite consensus disorder prediction 752 773 - -
Rops10g01952 1980 Gene3D - 930 993 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 383 397 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 830 874 - -
Rops10g01952 1980 ProSiteProfiles Post-SET domain profile. 1225 1241 IPR003616 -
Rops10g01952 1980 PANTHER SET DOMAIN PROTEINS 438 1728 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 720 735 - -
Rops10g01952 1980 FunFam Histone-lysine N-methyltransferase 932 993 - -
Rops10g01952 1980 SUPERFAMILY SET domain 1033 1238 IPR046341 -
Rops10g01952 1980 Pfam SET domain 1111 1217 IPR001214 GO:0005515
Rops10g01952 1980 MobiDBLite consensus disorder prediction 1692 1745 - -
Rops10g01952 1980 Pfam AWS domain 1063 1097 IPR006560 GO:0005634|GO:0042054
Rops10g01952 1980 MobiDBLite consensus disorder prediction 1727 1745 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 803 822 - -
Rops10g01952 1980 SMART set_7 1100 1223 IPR001214 GO:0005515
Rops10g01952 1980 MobiDBLite consensus disorder prediction 382 403 - -
Rops10g01952 1980 MobiDBLite consensus disorder prediction 1293 1324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01952 Rops-Chr10 35653036 35670690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01952 1083 1240 C2H2 Transcription Factor Family AT2G23740 32.597 5.12e-19 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops10g01952 SET 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01952 - - gmx:100795379 2859.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01952 10 35653036 35670690 Rops10g01952 10 35653036 35670690 ECH