Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01932 ATGGCTGTCATGAGAGAGATGATTTTCCGAGTAGCAGTTATGCAACCTATTCATATAGACCCAGAATCTATCAAGCCACCAAAGAGAAGGAATGTGAAAATTTCCAAGGATCCTCATAGTGTGGCAGTGAGACATAAAAGAGAAAGAATAAGTGAGAGAATAAGGATCCTTCAGAGATTAGTTCTTGGTGGGACTAAAATGGACACGACTTCTATGTTAGATGAAGCCATATATTATGTAAAGTTCTTAAAGAAACAAGTGCAGACTCTGGAACAAGCAAGAGCAACTAGACCCTTGAATGTTGTTGGCTTCTCGGGAGTGTCAAATTCCAACGTCAATTATTCTGCTTTAGTTAGGGGTTGCCAAGCTTGTCAAATGGTGAACTTCATTTCAAGCTCTGCAACTCTCGAATTTGTTTGCGTCATGAGCTTCTTGAGGCCCTCTGCATTGTACCACTTTCTGATTTCTTATTCTTCCCTGCGATGGATGCCCTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGCTTCTTGAGGCTTTTCGTGGTTGTTCTTCTATGGTCTTTTTTCTGCGAGCTTCGCTACATACCCTCAACTTCTATGTACCCCACCCTTCGTGTTGGTGATCGAATTATTGTTGAAAAGGCTTCATACTACATCAGGAGTCCCGCTATACATGATATTGTAACGTTTTGGGATCCAACACAGCTTTCTGGAGACAAAACAGATGTTGTTTTCATTAAGAGAGTTGTTGCAAAAGCAGGGGACACTGTTGAGGTTCATCATGGTGTACTCTATGTCAGTGGTGTTGCTCAGGAAGAAGATTTCATAGCAGAGCCACCAACATACACAACGAAATTAACTTATGTGCCCAAAGGCCATGTTTATGTGTTGGGGGATAATCGTAACAACAGCTATGATTCCCATGTATGGGGACCACTGCCTGTCAAAAACATAATTGGAAGACATGTCATGTGCTATCACAGACCAACAAATTGA 1005 0.4239 MAVMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPHSVAVRHKRERISERIRILQRLVLGGTKMDTTSMLDEAIYYVKFLKKQVQTLEQARATRPLNVVGFSGVSNSNVNYSALVRGCQACQMVNFISSSATLEFVCVMSFLRPSALYHFLISYSSLRWMPCQSWGFLRWPGLDGFLRLFVVVLLWSFFCELRYIPSTSMYPTLRVGDRIIVEKASYYIRSPAIHDIVTFWDPTQLSGDKTDVVFIKRVVAKAGDTVEVHHGVLYVSGVAQEEDFIAEPPTYTTKLTYVPKGHVYVLGDNRNNSYDSHVWGPLPVKNIIGRHVMCYHRPTN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01932 334 SUPERFAMILY LexA/Signal peptidase 190 329 IPR036286 -
Rops10g01932 334 CDD S26_SPase_I 194 324 IPR019533 GO:0004252|GO:0006465
Rops10g01932 334 ProSitePatterns Signal peptidases I serine active site. 200 207 IPR019756 GO:0004252|GO:0016020
Rops10g01932 334 Pfam Signal peptidase, peptidase S26 181 329 IPR019533 GO:0004252|GO:0006465
Rops10g01932 334 CDD bHLH_AtIND_like 35 91 - -
Rops10g01932 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 94 IPR036638 GO:0046983
Rops10g01932 334 Gene3D - 33 100 IPR036638 GO:0046983
Rops10g01932 334 Gene3D Umud Fragment, subunit A 200 332 - -
Rops10g01932 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Rops10g01932 334 FunFam Peptidase/ serine-type peptidase 200 329 - -
Rops10g01932 334 NCBIfam signal peptidase I 181 329 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops10g01932 334 PRINTS Bacterial leader peptidase 1 (S26A) family signature 191 207 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops10g01932 334 PRINTS Bacterial leader peptidase 1 (S26A) family signature 292 311 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops10g01932 334 PRINTS Bacterial leader peptidase 1 (S26A) family signature 248 260 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops10g01932 334 SMART finulus 40 89 IPR011598 GO:0046983
Rops10g01932 334 PANTHER SIGNAL PEPTIDASE I 178 332 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops10g01932 334 ProSitePatterns Signal peptidases I signature 3. 297 310 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01932 Rops-Chr10 35420820 35426044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01932 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 85.870 7.32e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01932 K03100 - gmx:100306121 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01932 10 35420820 35426044 Rops10g01932 10 35420820 35426044 ECH