Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01929 ATGTCGACCCAGAATCGTCGTTCTTCGTTTTCTTCCTCAACCACATCATCTTTGGCCAAACGCCATGCCTCTGCATCAGAAAACAACGTGGGAAAGGTTTTGGCCGTTCCTACACACTCCACCAAGAAACGACCTCCTCTCACTAACCTCACCAATCACATTGCTTCCCGCAACTCTTTCCATTCATCTTCCTCTCTGGTACCTTGTGGAACTAAAGTTGCAAAGACCAAGAAAGAGCCTCCTTCATCATGCACAACTACTACTAGCTCAGTAATCTCTGCCAACAAGATACCCATTTTGCAGAATGTTAAATCTGCTGCAGTTGTTTTACCCAAGGTTGCTACTTCTTTCCCAGAGAGGAAGGAAAATGCTCCATCATTTGCCACTGTCAGTGTTCCTGTTTCAAGCAGTATGAATGTTTCACCTAGTAAATCAGATGGGATGTCAGTTTCTATGGATGAGTCAATGTCTTCTTGTGATTCTTTCAAGAGTCCTGACATTGAGTATTTGGACAACACTGATATTTCAGCTGTTGATTCTATTGAGAGGAAGACATTCAGCAATCTCAACATCTCTGATACAACTGAGCCAGCAGGCAACATCTGTGGTAGAGACATACTTGTTGAGTTGGAAAAGGGGGAGAAAATTGTCAATGTCGATAACAATTACATGGATCCCCAACTCTGTGCATCGTTTGCTTGTGATATCTACAAGCACCTGCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAAAATTCAGAAGGACGTAAATGCCAGCATGCGTGCAATATTGATTGACTGGCTTGTGGAGGTAGCCGAGGAATATAGACTTGTACCTGATACACTGTATTTGACAGTAAACTACATAGATCGGTATCTTTCAGGGAATGTGATGAATAGGCAAAGGTTACAATTACTTGGTGTCGCCTGCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAGATGGAATCTACAGTCTTGAATTTTCTGAAGTTTGAAATGACAGCCCCGACAATTAAATGTTTCTTAAGAAGATTTGTACGTGCAGCTCAAGGAGTCGACGAGGCACCTTCACTGCAACTAGAGTGCTTGACAAACTATATTGCCGAATTATCTCTGTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTAATAGCAGCTTCTGCAATTTTCCTGGCCAAATTCATACTTTTCCCTTCCAAGAAACCATGGAATTCCACCTTGCGGCATTACACACTCTACCAGCCTTATGATTTGTGCGTTTGTGTAAAGGATCTCCATCGCCTTTTTTGCAACAGCTCTAATTCTAATTTGCCTGCAATTAGGGAGAAATACAATCAGCACAAGTACAAATATGTGGCCAAGAAGAACTGCCCTCCTCCTCCTTCAATACCTTCAGAATTTTTCCAGAATTGA 1500 0.422 MSTQNRRSSFSSSTTSSLAKRHASASENNVGKVLAVPTHSTKKRPPLTNLTNHIASRNSFHSSSSLVPCGTKVAKTKKEPPSSCTTTTSSVISANKIPILQNVKSAAVVLPKVATSFPERKENAPSFATVSVPVSSSMNVSPSKSDGMSVSMDESMSSCDSFKSPDIEYLDNTDISAVDSIERKTFSNLNISDTTEPAGNICGRDILVELEKGEKIVNVDNNYMDPQLCASFACDIYKHLRASEAKKRPSTDFMEKIQKDVNASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGVDEAPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSKKPWNSTLRHYTLYQPYDLCVCVKDLHRLFCNSSNSNLPAIREKYNQHKYKYVAKKNCPPPPSIPSEFFQN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01929 499 Gene3D - 235 483 - -
Rops10g01929 499 CDD CYCLIN_AtCycA-like_rpt2 364 478 - -
Rops10g01929 499 ProSitePatterns Cyclins signature. 266 297 IPR006671 -
Rops10g01929 499 SMART cyclin_7 368 456 IPR013763 -
Rops10g01929 499 SMART cyclin_7 271 355 IPR013763 -
Rops10g01929 499 FunFam Mitotic cyclin 6 249 349 - -
Rops10g01929 499 SUPERFAMILY Cyclin-like 364 487 IPR036915 -
Rops10g01929 499 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Rops10g01929 499 PANTHER CYCLINS 164 475 IPR039361 -
Rops10g01929 499 MobiDBLite consensus disorder prediction 1 24 - -
Rops10g01929 499 Gene3D - 249 362 - -
Rops10g01929 499 Pfam Cyclin, C-terminal domain 364 484 IPR004367 -
Rops10g01929 499 MobiDBLite consensus disorder prediction 1 48 - -
Rops10g01929 499 FunFam Cyclin A1 351 483 - -
Rops10g01929 499 Pfam Cyclin, N-terminal domain 235 361 IPR006671 -
Rops10g01929 499 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Rops10g01929 499 SMART Cyclin_C_2 364 487 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01929 Rops-Chr10 35413269 35417009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01929 4 499 Core Cell Cycle Gene Families AT1G44110 62.200 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01929 K06627 - gmx:100789565 749.969