Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01928 ATGCCCATTTTCCCGCTCAGGTTGCCCTTCAACGCAGCGTTTCACGTCGATATCGATAAACCCGGTCCTTTTATCTCTTCCCAACTCCAATCCGACGGTCATAATTGTTTACCAAACCTCACGAATTTCGCGCTTTCGCAAACGAATATCCGAACTCAAACTTCCTCCTCTCCTCTGCGTGTTTCGTTTTCCGAAATAAAGATCCTCTTGCAAGGGCTTTTCCCGCAATCTGAAAACCTAGGCTTCTCTTTCTCCAAATCATTCATCACACTCTACCGATTAGGGTTCTTTTATTTCCCCAAGCGCGAAATGTTTTCCCGAAACCGGCGTTTCCCTTCTTCTTCTTCTTCTTCTTCATCGTCCGAGAAGCGGTCCTCCGTTCCAGAAAATTCAAGCAAGAAGGTCACTGCCGTGAAGGCCCACTCGACAAAGAAGCGTCCCGCTCTCGCTGACGTAAGCAATAACAGAAATGCCTCTCTCGCAAGGACCTCCTTTGTTGCTCCATCCAAACCTATGGTTCCATGCATGTCCAAAACTGCCAAGACAAAGAAGGATTCTATTGCCAATTCGCAGAACAAACCTGTGTCTGGGAACACTTTGAGCATGAAAACAAGTGGGTTGGTACTTTCTAGAGACGCAGGTTCGACAAGAACTAGTCAACCTAAGGCTGGAGTTGAAGCCTCCCTCGCTCAGAGCACCGATGGTGATGTTGGTCCTGATTTTAATCGTGTTGTCTATGGCACGAGATGGAAGGGAATTTCTCCTAGCAAATCCTTTAGCAGTTCAGTTTCACTGGATGAGAGCATGTCAACTAGTGATTCTTTGAAGAGTCCAGAATTTGAATATGTTGACAACGATGATGTAGTATCGATCAAATCAATTGAGAATAGGACATGTAACATTCTTAATATTTCATACTCTCCAAAAATGGCAGGGAGAATGTGTGGTAGTGATACCATCACGAAGATAGAAGCAAATGAAGTTGTGGATATTGACTCCAATATCAAGTGCCCACAGTTCTGTGCATCCTTTGCCCATGAAATCTATGAATATTTGCGTGTATCTGAGGAAATTAAAAGGCCGTCTATGGACTTTATGGAGAAGATACAGAAAGGCCTCAATGCTAGCATGCGGGCAATACTTGTTGATTGGCTTGTGGAGGTTGGCGAAGAGTACAGGCTTCTACCAGATACGCTATTTTTAACAGTTAACTACATTGACCGCTATCTTTCTGGCAATGTAATGAATAGACAGCGATTACAACTACTTGGTGTTGCCTGCATGATGATTGCAGCCAAATATGAGGAGATCTGTGCCCCCAAGGTGGAAGAGTTCTGTTATGTAACTGACAATACATATTCTAAGGAGCAGGTGTTGCAGATGGAATCATCTGTGCTGAATTTCTTGAAGTTTGAAATGACAGCTCCAACAGTTAGATGTTTCTTGAGGCGCTTCATTGTTGTTGCCCAACGAACCTGCGAGGTTCCATGGATGCAGTTGGAGTATTTGGCGGACTATCTAGCAGAGCTATCTCTCCTTGAGTATGACATGCTTAAGTACACCCCATCATTAATAGCTGCATCAGCCACTTTCTTGGCAAAATACATACTACTTCCTAGGAAGAAACCTTGGAATTCTACGCTAAGGCATTACACAGGTTACCAAGCATCAGAATTGCGTGAATGTGTCAAGGGATTGCATTGGTTATGCTGTAATGGCTGTCATAATTTACCTGCCATCCGGGAGAAATACAGTCAGCATAAGTTCAAGTTTGTGGCAAAGAAATATTGTCCCACATCAATACCTCCAGAGATATTCGGCAACTAA 1827 0.4379 MPIFPLRLPFNAAFHVDIDKPGPFISSQLQSDGHNCLPNLTNFALSQTNIRTQTSSSPLRVSFSEIKILLQGLFPQSENLGFSFSKSFITLYRLGFFYFPKREMFSRNRRFPSSSSSSSSSEKRSSVPENSSKKVTAVKAHSTKKRPALADVSNNRNASLARTSFVAPSKPMVPCMSKTAKTKKDSIANSQNKPVSGNTLSMKTSGLVLSRDAGSTRTSQPKAGVEASLAQSTDGDVGPDFNRVVYGTRWKGISPSKSFSSSVSLDESMSTSDSLKSPEFEYVDNDDVVSIKSIENRTCNILNISYSPKMAGRMCGSDTITKIEANEVVDIDSNIKCPQFCASFAHEIYEYLRVSEEIKRPSMDFMEKIQKGLNASMRAILVDWLVEVGEEYRLLPDTLFLTVNYIDRYLSGNVMNRQRLQLLGVACMMIAAKYEEICAPKVEEFCYVTDNTYSKEQVLQMESSVLNFLKFEMTAPTVRCFLRRFIVVAQRTCEVPWMQLEYLADYLAELSLLEYDMLKYTPSLIAASATFLAKYILLPRKKPWNSTLRHYTGYQASELRECVKGLHWLCCNGCHNLPAIREKYSQHKFKFVAKKYCPTSIPPEIFGN* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01928 608 Pfam Cyclin, C-terminal domain 476 594 IPR004367 -
Rops10g01928 608 FunFam Mitotic cyclin 6 361 461 - -
Rops10g01928 608 ProSitePatterns Cyclins signature. 378 409 IPR006671 -
Rops10g01928 608 Gene3D - 347 594 - -
Rops10g01928 608 SMART cyclin_7 383 467 IPR013763 -
Rops10g01928 608 SMART cyclin_7 484 568 IPR013763 -
Rops10g01928 608 Pfam Cyclin, N-terminal domain 347 473 IPR006671 -
Rops10g01928 608 FunFam Cyclin A1 463 594 - -
Rops10g01928 608 MobiDBLite consensus disorder prediction 109 137 - -
Rops10g01928 608 Gene3D - 361 474 - -
Rops10g01928 608 MobiDBLite consensus disorder prediction 178 234 - -
Rops10g01928 608 SUPERFAMILY Cyclin-like 476 600 IPR036915 -
Rops10g01928 608 PANTHER CYCLINS 267 590 IPR039361 -
Rops10g01928 608 SMART Cyclin_C_2 476 598 IPR004367 -
Rops10g01928 608 CDD CYCLIN_AtCycA_like_rpt1 338 472 - -
Rops10g01928 608 CDD CYCLIN_AtCycA-like_rpt2 476 589 - -
Rops10g01928 608 SUPERFAMILY Cyclin-like 338 473 IPR036915 -
Rops10g01928 608 MobiDBLite consensus disorder prediction 182 227 - -
Rops10g01928 608 MobiDBLite consensus disorder prediction 108 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01928 Rops-Chr10 35396805 35402092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01928 107 608 Core Cell Cycle Gene Families AT1G44110 52.362 8.68e-167 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01928 K06627 - cave:132184255 564.688