Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01925 ATGGCAAGTTTGATGCAGCAGCAACAACAAGAAGAAGTGAGTGATGCAAATAACTCATCCAGGGTTGGAGGTAGCAACCGTGTAGTAGCTGTTAATGTGACCCCTTCTCATAACCCTCTTACACCCCATGCCTCCTCAAACCATGAGGAGTTTTCCATTCATTGTAAGATATATATGATGGATGCATTGACACAGAAACCTGGGTGGAGAAAGTTCTTGGTATATGTGGGTCCCGGTTTTCTAGTCTCCTTAGCTTACCTTGATCCAGGAAACATGGAAACTGATCTGCAAGCTGGAGCTAACCACGGATATGAGCTGCTGTGGGTGATACTTATTGGACTGATTTTCGCGCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTATGCACTGGAAAACACCTTTCAGAAATATGTAAAGCTGAGTACCCATTATTTGTCAAGTACTGCTTATGGATATTAGCAGAGCTAGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCACTTAACATACTCTTCCACATCCCAGTATGGGCAGGAGTTCTGTTGACTGGCTGCAGCACTCTCTTATTTCTGGGTCTCCAGAGATTTGGGGTACGGAAATTGGAACTGCTGATATCAATCCTAGTTTTTGTAATGGCTGCATGTTTCTTTGGGGAAATGAGCTATGTAAAACCCTCTGCTTCTGGTGTTTTAAAGGGAATGTTTGTGCCCAAACTCAGTGGTCATGGAGCTGTAGGCGATGCCATTGCCCTTTTGGGTGCCCTTGTCATGCCGCACAATCTTTTCCTCCACTCTGCTCTGGTGCTGTCTAGAAAAATGCCCGGTTCCGTGCGTGGCATCAATGACGCATGTAGATACTTTCTCATTGAGAGTGGATTCGCACTGTTTGTGGCATTTCTAATCAATGTTGCAATGATTTCTGTGACGGGCACTGTTTGCTCTGCCAGCAACCTTTCTGCAGAAAATGCTGATCACTGCAGTGATATTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAACGTGTTAGGACGATCAAGCTCAACCGTTTATGCCATAGCACTGCTAGCCTCAGGGCAAAGTTCTGCCATCACTGGAACCTATGCAGGACAGTTCATCATGCAGGGTTTCTTGGACTTAAGGATGAAAAAATGGATTAGGAACTTGGTGACTAGGTGTATTGCCATAACACCTAGTCTTATAGTCTCTATCATTGGTGGTTCTTCCGGGGCTGGTCGGCTTATCATCATTGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTATCATTATCATTGTCTTTTCATGGATACTGGGTTTGGCGCTCATTTGTATCAATGTGTACTACCTCATTACTGCCTTTGTGGGTTGGCTAATTCATAGCAGTTTACCAAAGGTGGCAAATGTGTTCATTGGAATCATAGTGTTTCCTTTAATGGCAATCTATATTATCTCAGTTATCTACCTAACCTTCAGAAAAGACACTGTTAAAACATTTATAGAGACGAAGAATGACCCAGCAATGCAAACCCACGTGGAAAAGGGGTTTGTAAATAATGGTCAATTAGAGTTGAATCAAGCTCCTTACAGAGAAGATTTAGCTGATATCCCACTACCAGAATAG 1701 0.4333 MASLMQQQQQEEVSDANNSSRVGGSNRVVAVNVTPSHNPLTPHASSNHEEFSIHCKIYMMDALTQKPGWRKFLVYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWVILIGLIFALIIQSLAANLGVCTGKHLSEICKAEYPLFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGEMSYVKPSASGVLKGMFVPKLSGHGAVGDAIALLGALVMPHNLFLHSALVLSRKMPGSVRGINDACRYFLIESGFALFVAFLINVAMISVTGTVCSASNLSAENADHCSDITLNSASFLLKNVLGRSSSTVYAIALLASGQSSAITGTYAGQFIMQGFLDLRMKKWIRNLVTRCIAITPSLIVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIIVFSWILGLALICINVYYLITAFVGWLIHSSLPKVANVFIGIIVFPLMAIYIISVIYLTFRKDTVKTFIETKNDPAMQTHVEKGFVNNGQLELNQAPYREDLADIPLPE* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01925 566 Hamap Divalent metal cation transporter MntH [mntH]. 42 480 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 NCBIfam Nramp family divalent metal transporter 77 443 - -
Rops10g01925 566 Pfam Natural resistance-associated macrophage protein 93 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 70 446 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PRINTS Natural resistance-associated macrophage protein signature 151 177 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PRINTS Natural resistance-associated macrophage protein signature 364 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PRINTS Natural resistance-associated macrophage protein signature 254 277 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PRINTS Natural resistance-associated macrophage protein signature 179 198 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PRINTS Natural resistance-associated macrophage protein signature 424 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PRINTS Natural resistance-associated macrophage protein signature 204 225 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PRINTS Natural resistance-associated macrophage protein signature 392 409 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 21 524 IPR001046 GO:0016020|GO:0030001|GO:0046873
Rops10g01925 566 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01925 Rops-Chr10 35370265 35375119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01925 24 566 Inorganic Solute Cotransporters AT1G15960 57.643 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01925 K21398 - gmx:100787785 920.228