Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01918 ATGAAGGTGGTGTTGTTGAATGTGGTGATGTTGCCGAAGGTGGTGAGTGGTGGGGGAAGGGGAGGCCGTGGAGGAGGTTGCCGGAGAAGACGGGTAAGAGCAAGAAACGGCAAGTCACTGGTCTTGCTCACGAGCCAAAAAACCATGGTGGATAGGGTGGACAGAGTTGCCAGATTAGCACAGTGGAAAATCGACAACTTCGGACCTAGTTCCTACAAAAAATCTGACCCTTTTAAGGTTGGAATCTGGAACTGGTACTTTTCAGTAGTAAGGAATAGGTACCTATACATTCATCTCTTTCCAGAACCTTCGCGGGTTTCTAAGGATCACCCACCCCTTGCAAAATTCATTCTTCGAGTCTCCAGTGCTGCTGGCTCATCCCGCAAGTTTCATATTTCTCCTGTTCATGAACGGCTGCTTAGGACACATGATGACTTTGTCTGGCCTGTTGATACTACTTCCGTTGGCCGCTTCATTATTGATGTTGAGTTTTTAGACCTGAAGATATGCCCTCCGAATGGTGGAGCAGCTAGTTCTATATGGCCATCTGATGGAAATTTGCTATCCATTGCAGCTCAACGTAGTTCTCTTCATTGCCTCTCTCGCATGCTTGATGAGGCCATACATGCTGACCTGACCATTATCACTGCTGATGGTACATTGAGAGCTCACAAGGCAGTTGTGTCTTCAAGTTCGCCTGTGTTCCAGAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCATCTACAATCCATATAGAAGACATGTCACTTGAATCCTGCATGGCCCTTCTAAGTTACTTGTATGGAACTATCAAACCAGAAGATTTCTTGAAACACCGGCTTGCATTGCTTGGAGCAGCAAATAAATATGACATTGGTAATCTCAAAGATTTCTGTGAGGAAAGCCTTCTTGAAGATCTTAACTCGGGGAATGTTCTTGAGATGCTAAATGAGGCTTGGTTTTATCAATTACACAAGTTAAAGAAAGGGTGTTTGATATTCTTATTTGAATTTGGCAAAATATATGATATTAGAGATGATGAAAAAAATAACTTTTTCATGCAAGCTGATAGGGAGCTAATGGTGGAGATGTTTCAGGAGGCACTTACAATTTCGAACCCATTATAG 1131 0.4332 MKVVLLNVVMLPKVVSGGGRGGRGGGCRRRRVRARNGKSLVLLTSQKTMVDRVDRVARLAQWKIDNFGPSSYKKSDPFKVGIWNWYFSVVRNRYLYIHLFPEPSRVSKDHPPLAKFILRVSSAAGSSRKFHISPVHERLLRTHDDFVWPVDTTSVGRFIIDVEFLDLKICPPNGGAASSIWPSDGNLLSIAAQRSSLHCLSRMLDEAIHADLTIITADGTLRAHKAVVSSSSPVFQSMFHHNLKEKESSTIHIEDMSLESCMALLSYLYGTIKPEDFLKHRLALLGAANKYDIGNLKDFCEESLLEDLNSGNVLEMLNEAWFYQLHKLKKGCLIFLFEFGKIYDIRDDEKNNFFMQADRELMVEMFQEALTISNPL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01918 376 Gene3D Potassium Channel Kv1.1; Chain A 189 337 IPR011333 -
Rops10g01918 376 Pfam BTB/POZ domain 203 306 IPR000210 GO:0005515
Rops10g01918 376 PANTHER OS08G0495500 PROTEIN-RELATED 51 375 IPR044714 -
Rops10g01918 376 ProSiteProfiles BTB domain profile. 210 269 IPR000210 GO:0005515
Rops10g01918 376 SMART BTB_4 210 308 IPR000210 GO:0005515
Rops10g01918 376 SUPERFAMILY POZ domain 195 306 IPR011333 -
Rops10g01918 376 CDD BTB_POZ_ZBTB_KLHL-like 209 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01918 Rops-Chr10 35318014 35325050 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops10g01918 BTB 3.3e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01918 K10523 - gmx:100787262 557.755