Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01904 ATGGCATCAGAGCTTCAATTCCCACCAGGCTTCCGATTCCATCCAACGGATGAGGAACTCGTCATGCACTATCTCTGCCGGAAATGCACCTCGCAGCCCATCGCTGTTCCCATCATCGCTGAAATTGACCTCTACAAGTACGATCCTTGGGACCTTCCTGGTAAGGCTTGGTATGGAGAGAAGGAGTGGTACTTCTTCTCACCAAGGGAAAGGAAATACCCGAACGGGTCGAGGCCGAACCGGGCTGCTGGATCCGGGTACTGGAAGGCAACCGGGGCGGATAAACCCATTGGTGGCCCGAAACCCGTTGGGATCAAGAAAGCATTGGTGTTTTACGCAGGGAAAGCACCAAAAGGGGACAAAACTAATTGGATCATGCACGAGTATAGGCTCGCAGATGTAGATCGCTCCGTTCGCAAAAAGAACAGTTTAAGGCTTGATGACTGGGTGCTTTGCCGTATTTACAATAAGAAGGGCATCATCGAGAAACAGCCAAGTAGCGTTGCTGTTGTTAACCGGAAAACCGAATCATCGGAAATCGAAGACAAGAAGCCTGATATTTTGACACGTGGAGGTGGTCTTCCGCCGCCACATCCGCCGCAAGCGTCGGCGACGATGACGGATTATATGTACTTTGACAACTCAGATTCAATCCCGAAGCTGCACACGGACTCGAGCTGCTCGGAGCAAGTGGTGTCGCCGGAATTTGCGAGCGAGGTGCAGAGCGAGCCCAAGTGGAACGAGTGGGAAAAGAACCTCGAATTTCCCTATAATTACGTGGATGCCACTCTCAACAACGGCTTCGGGTCCCAATTCCAGAGCAATAATCAGATGTCGCCGTTGCAGGATATGTTCATGTACTGGCCCAAGTCCTTCTGA 879 0.5154 MASELQFPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGKAWYGEKEWYFFSPRERKYPNGSRPNRAAGSGYWKATGADKPIGGPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGIIEKQPSSVAVVNRKTESSEIEDKKPDILTRGGGLPPPHPPQASATMTDYMYFDNSDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWEKNLEFPYNYVDATLNNGFGSQFQSNNQMSPLQDMFMYWPKSF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01904 292 FunFam NAC transcription factor 16 161 - -
Rops10g01904 292 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Rops10g01904 292 MobiDBLite consensus disorder prediction 172 205 - -
Rops10g01904 292 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Rops10g01904 292 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Rops10g01904 292 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Rops10g01904 292 PANTHER NAC TRANSCRIPTION FACTOR 56 7 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01904 Rops-Chr10 35113538 35115670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01904 1 292 NAC Transcription Factor Family AT1G01720 71.429 6.57e-148 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g01904 NAM 9.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01904 - - gmx:732553 524.628