Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01903 ATGGAACGTGAGGAGGGAAAACAATCTTCCCACAAAAACCCCTATGTTGAACTTGAGGAAGTTAGCTTTGATTTTATTCTTGCAATTGGCTTGCAAGAACAAGAGAGAACGTTGACCATGCTAGAAACTATTGAAAGTGAAAGTGATGAAGATGTAAGTGAATCCTCTTTTAATGATGATGATGATGGAGATGCTGATTTCTTGGAGAGTCAGGAGTTTGAAGGTGAAGGAAGCAATGATGATGATGAAGAAATGGAAATGGAAGAAGATGAGATTGACCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTGGGAGAGTTTATAGGAAAAGAGATGAGAGGATTATCAGCAAATGAAATCTCCTCATGCTTACAGCCTTACAGTTGCCAATCTGCTGCAACCAAAGGTGGAATTGACCGCTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTGAAGCCTTGGTGGCACTTGAGTGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATCTGTAGCAATGAAGTTTCAACTCCCAACATAGCTAAGAATCCTTGA 588 0.398 MEREEGKQSSHKNPYVELEEVSFDFILAIGLQEQERTLTMLETIESESDEDVSESSFNDDDDGDADFLESQEFEGEGSNDDDEEMEMEEDEIDPDELSYEELIELGEFIGKEMRGLSANEISSCLQPYSCQSAATKGGIDRCVICQVEYEEGEALVALECEHPYHADCISKWLQIKKVCPICSNEVSTPNIAKNP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01903 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Rops10g01903 195 SMART ring_2 142 182 IPR001841 -
Rops10g01903 195 MobiDBLite consensus disorder prediction 40 95 - -
Rops10g01903 195 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 4 89 IPR043312 -
Rops10g01903 195 FunFam E3 ubiquitin ligase BIG BROTHER-related 108 189 - -
Rops10g01903 195 Pfam Ring finger domain 141 182 IPR001841 -
Rops10g01903 195 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Rops10g01903 195 MobiDBLite consensus disorder prediction 44 95 - -
Rops10g01903 195 SUPERFAMILY RING/U-box 141 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01903 Rops-Chr10 35102624 35103319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01903 79 186 C3H Transcription Factor Family AT3G63530 48.182 6.66e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01903 K19045 - gmx:100526881 271.937