Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops10g01902 | ATGTCTGCGCCATTTATTTTCTCTTGGAAAGTGAACAATGCCCCGGTTGATGAATCCGAAGTGGGGTTTTATCAGATCCTCGAACAAGATCATTCTGGGGATTTTTTTAACATTAAGGTCCATGTTAAACATCGACCATACTTCACTCAGTCACAACCACAACCACCCCCACTCTTTGGTTGGTTTTCACATGAGGACTCCATGCTGGTGCCTAGTCATGAATTATTTGAAAACGGTTCATCATACATGCAAATGTATTTTCCTGATCATATCATTCCCCATGAAATGATTCCCTCAATGATGCCAGAAGTTATAACATACGCCCATGACTTGGCTCAAAATTGCCATTCTGGTGACCATTATGAAAGTCCCCACTTTCGTTTGTTCACTTTGGTTTTGGATATTGTTATTCGAAAATTACATGATGAGCATGATGATGACATCACCAGGGAGCCCATGGTGGAGGTTGATAGGGTTCCTGTATCAAAGGGTACAATTGAATCAATCAAGAAAGTGAAGCTAAAAAAAGATAGTGTTATTATGAAAAGTTGTAGGATTTGTCTGACGGAGTTTGATGATGGTAAAGAGGTTTCATCAATGCCTTGCAACCATGTGTATCATCAAGAGTGTCTCATTCAGTGGCTAAAAACGAATCATGTGTGTCCTTTGTGTCGTCACCCTATGCTCTCTTCAACGACCAATTCTTGA | 708 | 0.4025 | MSAPFIFSWKVNNAPVDESEVGFYQILEQDHSGDFFNIKVHVKHRPYFTQSQPQPPPLFGWFSHEDSMLVPSHELFENGSSYMQMYFPDHIIPHEMIPSMMPEVITYAHDLAQNCHSGDHYESPHFRLFTLVLDIVIRKLHDEHDDDITREPMVEVDRVPVSKGTIESIKKVKLKKDSVIMKSCRICLTEFDDGKEVSSMPCNHVYHQECLIQWLKTNHVCPLCRHPMLSSTTNS* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops10g01902 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 230 | IPR013083 | - | |
| Rops10g01902 | 235 | Pfam | Ring finger domain | 183 | 225 | IPR001841 | - | |
| Rops10g01902 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 184 | 225 | IPR001841 | - | |
| Rops10g01902 | 235 | SMART | FANCL_C_2 | 180 | 233 | - | - | |
| Rops10g01902 | 235 | SUPERFAMILY | RING/U-box | 183 | 230 | - | - | |
| Rops10g01902 | 235 | PANTHER | SI:CH211-59O9.10 | 129 | 232 | - | - | |
| Rops10g01902 | 235 | SMART | ring_2 | 184 | 224 | IPR001841 | - | |
| Rops10g01902 | 235 | SMART | ringv_2 | 183 | 225 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops10g01902 | Rops-Chr10 | 35090043 | 35090750 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops10g01902 | 146 | 228 | C3H Transcription Factor Family | AT1G18760 | 34.884 | 4.81e-16 | 72.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops10g01902 | - | - | psat:127082836 | 211.075 |