Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01901 ATGATGCCAGATGTTATAAAATATGCCAAAACCGTGGCTCAAAATTGTCGATCTGGTAACCATTATGAGAGTCCCCAATTTCGTGTGTTCACTTTGCATTTGAATATTATTGTTCAGAAATTATATGATGAGCCTGATGATGACATCATCAACATGGTCTTGAGTGAGTCCATGGCAGAGGTTGAAATGGTTCCTACATCAAAGACAGCCATTGACTCAATCAAGAAAGTGAAGCTAAAGAAAGATAGTGTTATGGAAAGTTGTAGAATTTGTCTAACGGAGTTTGATGATGGCATGGAGGTTTCATCGATGCCTTGCAACCATTTGTATCATCAAGAATGTCTCATTCAGTGGCTAAAAACTAGTCATGTGTGTCCTTTGTGTCGTTACCCCATGCCCACTTCAATGACCAATTATTGA 420 0.3881 MMPDVIKYAKTVAQNCRSGNHYESPQFRVFTLHLNIIVQKLYDEPDDDIINMVLSESMAEVEMVPTSKTAIDSIKKVKLKKDSVMESCRICLTEFDDGMEVSSMPCNHLYHQECLIQWLKTSHVCPLCRYPMPTSMTNY* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01901 139 SMART FANCL_C_2 84 137 - -
Rops10g01901 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 135 IPR013083 -
Rops10g01901 139 CDD RING-H2_PA-TM-RING 87 129 - -
Rops10g01901 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 133 - -
Rops10g01901 139 ProSiteProfiles Zinc finger RING-type profile. 88 129 IPR001841 -
Rops10g01901 139 Pfam Ring finger domain 87 129 IPR001841 -
Rops10g01901 139 SUPERFAMILY RING/U-box 87 135 - -
Rops10g01901 139 SMART ringv_2 87 129 IPR011016 GO:0008270
Rops10g01901 139 SMART ring_2 88 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01901 Rops-Chr10 35086439 35086858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01901 56 133 C3H Transcription Factor Family AT1G18760 39.241 4.66e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01901 - - aprc:113870408 192.586