Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01889 ATGGTCGGTCCCGTCATGGAGCTCACTCCACCCTGCGATACCGGCTCACCACCCCGCCGTAGTGTTCGCCGGAGGTTGGTCCAATCAACGCTATTCCCTCACAAGCCACCAGAACCCAAGGAAAAAGAAGACAAAGAGGATGAACAGGACGAGGATTACTGCGATGCCGAGAATAATCACAAGAAGAGGAAGAAGCCCAAGGGAAAAACCACTCCTCGAAAAAAAGGTTCCAAGAATACCACGCCGAAGGAAAATGTATCAGCTGATGGGATTAAAGGGTCAACTTCACGGCATATGTTGGGTGATTCTGATCAGGTTGATACACCCATACCTGATTTGCGATTAGAGGCAAAATTGTCAGCTGAGGAAAATTCGAGGATGTTTGCAGGACGGCAAATGCATCCATTTTTTATGTCGCGGAAGGTGGGGAAGACAGTTCAGGAGCTGGCTGAATCAGGAAGTAATTTATGCACGGCTAAGAGTGAGGATGAAATGATTACCTGTGGCCCTATTCATGTATTTGAAAATATTAAGGATGATGCCTCGTCCCTTGATTGGAGAAACTGGACTTTTTTGGAAAATACCACCGATGTGAATTATTGTCCTGAAAGTCCAAATTCATCTATTTTAGAGGGTTCTGTTGAATCCTTAAATTTTGAAATGCTTCTTAGTACCTTGGGTTCATCAGGTGCTTCAATTTTTCACAATGTCTTATCTTCTTCGGATAGACTTTCTATACATCCAGAAAATCTGCAAGAATTATCACCTTCAAACTCAGCTTCACTAGCAGAACCAACGATATGTCCTCAGATGCCAAAAGACGCCAAAGTGGGCACGGACGGGGATGAGTCTGTCACTTTTTCTGTGCAAGCTGGCATTTTTAGAAAGTCAGATACTGAGCCACTGAGTAGATTTCTTCAAGAAAGTATGAGGTCTTACTACCATAGTTGTGAAGATAAGGCTGAAGGCAGCTTATGGACACACAAATACAAGCCAACAAAGGCTGTTGAGGTATGTGGTAATGATGAATCTGTGAATTTCTTACGTGATTGGCTACATCTTTGGCATGAAAGACGTTATCAAAGCAGGAAGGATACTTCTAATGGGGATAAAAGTGACATGCAAGATGACGATGATGACTATAACTGTTCTTATAGTGACTACGATTCTGAAGACATAAATGAGGAGGACTCCCTGCAGAATGTTCTTTTAATTACAGGACCAATAGGGAGTGGCAAGTCTGCAGCAGTCTATGCTTGTGCCCAAGAGCAAGGGTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTATTGTCAAGCAGTATTTTGGAGATGCTCTTGGTTCACTTGGGTTCAAAAGGTTATCGGACAACACTGTGAGTTCACAGAAGAAAACAATGAAATTGCCCCCAGCTCCTGATTTGCTTAATGGTATAGCTGATGATGAGGTGAATGATGGGGTGGTTGAACTGATAACCATATCTGACGATGAAGCTCATACCCCTGGTCCCTCACGGAAGTTACTTGGCAAAAATAATGTAGTTGCATGTGATAAAGTGCAAACTTTAATTCTAGTTGAGGATGTGGACATCCTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACAGCAAGAGGGCCAATTGTATTGACCAGCAATAGTGATAATCCTGGCCTGCCAGACAATTTTGATAGGCTCCATGTGTCATTCTTATTGCCTTCGCCAAAGGAGTTGCTTTGCCATTTGTACACTGTTTGTCTCACAGAAGGAGTCACAATCCATCCTCTTTTACTGGAGAAGTTTATACAGTCTTGTGATGGAGATATCCGAAAAACCATTATGCATCTTCAGTTCTGGTTACAGAGTAAAAGATTTAGAAAAGAAGGAAAAGCACAAACAGGTTATGGGTCACTTCCATTTGATCTTGAGGTTGGCCATCAGATACTACCAAAGATAATGCCCTGGGATTTCCCCTCAGAGATATCCGAACTAATTGAGAATGAATTTGCCAAGTCAGTAAATGTAATGGAAGAAAACTCTAGTTGGCAAGGGCTAGTTAAGGAAGATCTTCACATAAATGGAAGACAAAATGGTTTAGAAGTGCATTATCTAGAGACTGATTATATTGAGGCCAAGAAGGTGGAGATGATTAAGATAAATGGATCCATAACAGATTACAGTGAGCTTGAAATTCAATATAATGCTATTTCTGAGTTTTCCAATTCTTCTGGATCCCCACTAGCATCCCCTCGGCAAAATGGTCGAAGGAAACTTGTAGTCATGTCCTCTGATTCTGAGGATGAGGATTCAAATGAACAAAATCCTCCAGACACACAAAATGAAGATAATAAGGGACAGTCCGTCAAAGAAAATAATGAATGTTCCTCTGAGTTTCAGTTGAATGAAAACTACCCCAGCACTTCAGTTCGTAAACTAGTTTGTTCTGAATTGGAGGATTCAGAGGAGGAACATTTTAAATATTCAGAAACAGCTGTTGATACATGCTTAAATGAAACATGTAAATCATTTGATATATCCTGTGTGCCAGAATCAACATTTGTTCCTGAGACGGCAATTGACAACGGGACAGAGACAACTTCTGGAGCAGTGTCTTCTGGCCATCTTGTTGTTCCTCTTGAAGTTTCCGTGAATAATGAATCGAAACCATTCACTTTTGGTGTTCGTAAGCGGTTAGCGAAATTGTCCCGAAATTCAGATATGCTGGTGGATACTGAAATTTCAGATTCTTCTCCAAAAGAGGCTCTGCAAGATTTTCTAGATGAAAATATGGAAGCTAAAATGATCAATGTGATGGATGAGTGCAGCCGTGTGGACTTCAAGTTAAAGTCAACATTTGTTGAGTCCAGTCCATCAACGGAGACAGATATGGTACAAAAATTGTGGAGAAAACTCCGTGAGCGTCAAATGGATTTAAGACAGCTTGCTACCTCAGAACAGCCAGGTGCATTTGAAGTTGTTAAGCTTGCTAGTGGACTGAGCAATCTAATTTCAGAAGCTGACTTGTTTCATAATCACCGACAAAAACGAGATATTTTGGAATCTCCAATGTTCCTCTTTGGTGAAGACACATCTAGTTGGTATGATGAGCAAATAATGATGTCCACTGTTTCTGTACATGGGTTTTGTTTTTATGCTAAACTTATCGCAGATGTTGGATCAAAGTTGGGTTGTGAGAACAGGGTTGATTTAACTTCTGAGATGTTGGCTTCCACAACTAATATTATGGCGTTGGGGAAATTATCCGAACAGGATCTCACCAAAAGCACGGCTATCTATACCGGAAAGGAGTTAGAGTTGAACAACCCAATAAGTCATATGCAGAAGAGTGAAAACAAAACATCTCTGCTCGAGGTCATCCAGTCCATTGTTCCTGCAAGAATATCCTTGGTACTGAAAGGTGATGCATTCAATGAATATCTATCTTCATTGCGTCAAATTTCAAGGTCAGAAGCTTTCCGCATTTCACAAGGTGTTGAAAAAAGAAGAGGAAGGGTGCGGGGTGCTCAACATTACTTGAGCAGATGTACTATGTTGTCTCCTGAAGATATATCTTTGGTACGTGAAGGTGATTTGTACAGAAAAATTTCTTCACAATTTACAACTAACATGGAAATCAAATCATAG 3672 0.4093 MVGPVMELTPPCDTGSPPRRSVRRRLVQSTLFPHKPPEPKEKEDKEDEQDEDYCDAENNHKKRKKPKGKTTPRKKGSKNTTPKENVSADGIKGSTSRHMLGDSDQVDTPIPDLRLEAKLSAEENSRMFAGRQMHPFFMSRKVGKTVQELAESGSNLCTAKSEDEMITCGPIHVFENIKDDASSLDWRNWTFLENTTDVNYCPESPNSSILEGSVESLNFEMLLSTLGSSGASIFHNVLSSSDRLSIHPENLQELSPSNSASLAEPTICPQMPKDAKVGTDGDESVTFSVQAGIFRKSDTEPLSRFLQESMRSYYHSCEDKAEGSLWTHKYKPTKAVEVCGNDESVNFLRDWLHLWHERRYQSRKDTSNGDKSDMQDDDDDYNCSYSDYDSEDINEEDSLQNVLLITGPIGSGKSAAVYACAQEQGFDILELNASDCRNGTIVKQYFGDALGSLGFKRLSDNTVSSQKKTMKLPPAPDLLNGIADDEVNDGVVELITISDDEAHTPGPSRKLLGKNNVVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIVLTSNSDNPGLPDNFDRLHVSFLLPSPKELLCHLYTVCLTEGVTIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKRFRKEGKAQTGYGSLPFDLEVGHQILPKIMPWDFPSEISELIENEFAKSVNVMEENSSWQGLVKEDLHINGRQNGLEVHYLETDYIEAKKVEMIKINGSITDYSELEIQYNAISEFSNSSGSPLASPRQNGRRKLVVMSSDSEDEDSNEQNPPDTQNEDNKGQSVKENNECSSEFQLNENYPSTSVRKLVCSELEDSEEEHFKYSETAVDTCLNETCKSFDISCVPESTFVPETAIDNGTETTSGAVSSGHLVVPLEVSVNNESKPFTFGVRKRLAKLSRNSDMLVDTEISDSSPKEALQDFLDENMEAKMINVMDECSRVDFKLKSTFVESSPSTETDMVQKLWRKLRERQMDLRQLATSEQPGAFEVVKLASGLSNLISEADLFHNHRQKRDILESPMFLFGEDTSSWYDEQIMMSTVSVHGFCFYAKLIADVGSKLGCENRVDLTSEMLASTTNIMALGKLSEQDLTKSTAIYTGKELELNNPISHMQKSENKTSLLEVIQSIVPARISLVLKGDAFNEYLSSLRQISRSEAFRISQGVEKRRGRVRGAQHYLSRCTMLSPEDISLVREGDLYRKISSQFTTNMEIKS* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01889 1223 MobiDBLite consensus disorder prediction 81 102 - -
Rops10g01889 1223 Gene3D - 323 575 IPR027417 -
Rops10g01889 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 636 IPR027417 -
Rops10g01889 1223 MobiDBLite consensus disorder prediction 749 809 - -
Rops10g01889 1223 MobiDBLite consensus disorder prediction 1 109 - -
Rops10g01889 1223 Gene3D - 582 643 - -
Rops10g01889 1223 MobiDBLite consensus disorder prediction 362 382 - -
Rops10g01889 1223 MobiDBLite consensus disorder prediction 62 76 - -
Rops10g01889 1223 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 13 1213 IPR004582 GO:0006281
Rops10g01889 1223 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 584 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01889 Rops-Chr10 34954809 34963521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01889 326 627 Core DNA Replication Machinery Family AT5G22010 22.930 9.66e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01889 K26118 - gmx:100784209 1675.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01889 10 34954809 34963521 Rops10g01889 10 34954809 34963521 ECH