Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01885 ATGGAGGACCAAAATGCTAGTGGTAAGTTTAGCAAGGGATTTCGTAAGGTTAAACCTTACCTTGCTATTTTGTCCCTTCAGTTTGGATATTCTGGGATGTATGTTATCACTATGGTTTCTTTCAAACATGGCATGAGCCATTGGATACTCTCAGTGTATCGTCATGTAGTTGCTGCTCTTATAATAACCCCTTTTGCCTTTGTCCTTGAAAGAAAAATAAGGCCAAAGATGACTCTTCCTATCTTCCTGAGGATAGTGGCGCTTGGTTTCCTTGAGCCAGTGCTAGATCAGAACTTGTACAACATGGGGATGAAGATGACTTCAACAACATTTGCATCTGCAACTGTTAATGTCCTCCCAGCTATTACTTTTATAATGGCACTCATTTTCAGGTTAGAGACAGTCAACTTGAGAAAATTCCACAGCCTAGCCAAGGTCATTGGAACAGTTATAACAGTTTCAGGAGCTATGGTCATGACTTTGTACAAGGGCCCTGCCTTTCAGATCATAAAGAGTGGAGGAATCAGCCACCATGGTGCTGCCAACACCGAAGAACCTTCTGACCAGCACTGGGTGATGGGCACAGTAATGCTCATATCAAGTTTGACTAGTTGGGCTGGCTTCTTTATTTTGCAATCATTCACTTTGAAGGAGTACCCAGCAGAGCTCTCACTCACAGCTTGGATTTGCTTGATGGGTATTATTGAGGGTTCAATTGCATCGTTTATTTTTGAACGGGACTTGAGCGTGTGGGTCATTGGCTGGGACTCGAGGCTTCTTGCTTGTGTTTATTCTGGGGTAATATGCTCTGGAATGGCATACTATGTACAAGGGGTTGTGACAAGGGAACGTGGACCAGTATTTTTGACTTCTTTCAGCCCACTAATTATGATTATCACTGCTGCATTGGGTTCCTTTGTCTTAGCAGAGCAAGTTCATCTGGGAAGTATATTTGGAGCTATTCTCATTGTCTTCGGGCTTTACTCTGTGGTATGGGGCAAGAGCAAAGATAGTCCTAACACAAAAAATAATGAGAAAGCTGAAGGCCAAGAATTGCCAATAAAGGATGGTACAAGATCAGAATCAGACAATTTTGATGGCATTGAGATCAATGTTCCTGCTGAGATGTTGAAGAAAGGGGCAGGGAAAAATGTTACACCAACAACAACATCATGA 1176 0.4243 MEDQNASGKFSKGFRKVKPYLAILSLQFGYSGMYVITMVSFKHGMSHWILSVYRHVVAALIITPFAFVLERKIRPKMTLPIFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALIFRLETVNLRKFHSLAKVIGTVITVSGAMVMTLYKGPAFQIIKSGGISHHGAANTEEPSDQHWVMGTVMLISSLTSWAGFFILQSFTLKEYPAELSLTAWICLMGIIEGSIASFIFERDLSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFLTSFSPLIMIITAALGSFVLAEQVHLGSIFGAILIVFGLYSVVWGKSKDSPNTKNNEKAEGQELPIKDGTRSESDNFDGIEINVPAEMLKKGAGKNVTPTTTS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01885 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Rops10g01885 391 MobiDBLite consensus disorder prediction 337 365 - -
Rops10g01885 391 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Rops10g01885 391 Pfam EamA-like transporter family 24 152 IPR000620 GO:0016020
Rops10g01885 391 PANTHER WAT1-RELATED PROTEIN 19 342 IPR030184 GO:0016020|GO:0022857
Rops10g01885 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 335 - -
Rops10g01885 391 MobiDBLite consensus disorder prediction 339 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01885 Rops-Chr10 34900618 34904121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01885 16 356 Nodulin-like Gene Family AT4G08300 68.222 9.79e-172 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01885 - - gmx:100811114 671.003