Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01884 ATGGGTGCGTGGTTCAGAAATGCAAAGCCATATCTGCTGTTATTGGCCGTTCAATTTGGCTCTGCTGGCATGTTCATTTTCGCCATGGATGCCATCAAAAAGGGCATGAGCCATTACGTGTTCATTGTTTACCGTAATGCCATCGCTGCTGTCACTCTCTCTCCCTTCGCATTTGTTCTAGAAAGGAAAGTTAGGCCCAAGATGACTGTCCGGGTATTTTCAGAGATTATGGCACTGGCTTTCTTCGAAATAATACTTGATCAATGCTTCGCTCTCTTGGGGATGAAATTTACGTCTGCATCTTTCCTTTCTGCTGTGATGAACTCCGCACCCTCCATTACTTTTGTGTTGGCTGTCATCTTAAGAATGGAGCACATGAAGATTAAGGAGGTAGCATGTCAAGCCAAAGTGATTGGCACCGCAATAACTTTTGGAGGGACTTTGCTAATGGCACTGTACAAAGGTCCTGTTGTTAGTGTTGTGGGATCATCAAACAACAACCATGCTAGCCAGCCTGAGAATGTTAACGACCCCACCGGCAACCACTGGGTCATAGGGACATGCTTCCTCCTCATTGGTTGTGCAGGCTTTTCTGCTTTTTACATATTGCAGGCCATAACATTGAGAAAGTACCCAGCAGAGATGTCCCTAGCCACGTGGGTTTGCTTTGTTGGAGCACTTCAAAGCTCAGTTGTTGCAGTTTTCGCAGAGCGCCACCACCCTCATGCTTGGTCTCTCGGTTGGGACACACGACTCTTTGCTCCCGCTTACGCGGGAATAGTTACATCAGGAGTCCAGTATTACATACAAGGCATGGTCATAAAATCCATGGGCCCAGTTATTGTGACTGCTTTTAATCCCCTGCGTATGATCATTGTCACGGCCTTGGCTTGCATCATCCTCTCTGAGCATCTCTATCTTGGAAGTATTGTTGGAGCAATAGTGGTGGTTCTTGGGCTTTATCTAGTTGTGTGGGGAAAATCTAAAGAATGCAAAGGTCGGATGCCACCGTCCCCTGCAAAAGAGAGCTCCCTGCAAGACCAACAACAGCTACCGGTCACAGCTCCCATTAAAGAAAGTAATGATAACAAAGGTCAATTGGTCATTCAAGGTGATTGA 1119 0.4647 MGAWFRNAKPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIAAVTLSPFAFVLERKVRPKMTVRVFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSITFVLAVILRMEHMKIKEVACQAKVIGTAITFGGTLLMALYKGPVVSVVGSSNNNHASQPENVNDPTGNHWVIGTCFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFVGALQSSVVAVFAERHHPHAWSLGWDTRLFAPAYAGIVTSGVQYYIQGMVIKSMGPVIVTAFNPLRMIIVTALACIILSEHLYLGSIVGAIVVVLGLYLVVWGKSKECKGRMPPSPAKESSLQDQQQLPVTAPIKESNDNKGQLVIQGD* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01884 372 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020
Rops10g01884 372 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020
Rops10g01884 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Rops10g01884 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 222 328 - -
Rops10g01884 372 MobiDBLite consensus disorder prediction 341 372 - -
Rops10g01884 372 MobiDBLite consensus disorder prediction 333 372 - -
Rops10g01884 372 PANTHER WAT1-RELATED PROTEIN 10 340 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01884 Rops-Chr10 34866898 34869892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01884 2 364 Nodulin-like Gene Family AT1G44800 42.582 1.20e-108 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01884 - - gmx:102665912 624.394