Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01878 ATGGTCAAGTCAGAGAACGAGATCAAAGCAGAATCATCAAAGCCACTAAAATCTTTATCCTCATCAACAGCATCAGACAGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGTTCATGGGTATCTGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGCTAGGCTCTTATTCAACACCAGAGGCAGCAGCTAGAGCCTATGATGCTGCACTTCTTTGCCTTAAAGGCTCCTCAGCTAGTCTCAATTTCCCATTAAGTTCTTCTTCACAATATATTCCTCAAGATACTGTCATGTCCCCAAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCTAATAGCTTCTTTGACAATGCCAACACTCCTCCTTCCCCACCTCCTGCATCAACATCATCATCATCATCAGTCTCCTCTCCATCAATGGCATCCTCTCCCTCGGATCAAATCGATGATGATGTCTCACTAAGGTCATCTTCTGAGGCCTACTCTAGTCATGATCAAGCAAATGATTCAATGGCTATGATGGAACCTTGGTACCCCTTTGATGGTCTACAATATGTTGATCAGATGTTAAGTGCTGCTTTCTTTGATGTTGATTCACCCAATCTGCTTGATGATCTGTATGAAGAAAGTGATATTCGTTTGTGGAGCTTCAGCTGA 669 0.4305 MVKSENEIKAESSKPLKSLSSSTASDSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSASLNFPLSSSSQYIPQDTVMSPKSIQRVAAAAANSFFDNANTPPSPPPASTSSSSSVSSPSMASSPSDQIDDDVSLRSSSEAYSSHDQANDSMAMMEPWYPFDGLQYVDQMLSAAFFDVDSPNLLDDLYEESDIRLWSFS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01878 222 FunFam ethylene-responsive transcription factor ERF014-like 30 90 - -
Rops10g01878 222 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Rops10g01878 222 PIRSF PTI6 127 218 IPR017392 GO:0003700
Rops10g01878 222 PIRSF PTI6 1 134 IPR017392 GO:0003700
Rops10g01878 222 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Rops10g01878 222 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Rops10g01878 222 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Rops10g01878 222 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Rops10g01878 222 MobiDBLite consensus disorder prediction 120 170 - -
Rops10g01878 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 166 - -
Rops10g01878 222 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Rops10g01878 222 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Rops10g01878 222 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Rops10g01878 222 MobiDBLite consensus disorder prediction 133 170 - -
Rops10g01878 222 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01878 Rops-Chr10 34786657 34787671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01878 32 222 AP2-EREBP Transcription Factor Family AT1G21910 52.020 2.73e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g01878 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01878 - - pvu:PHAVU_009G123300g 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01878 10 34786657 34787671 Rops10g01878 10 34786657 34787671 ECH