Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01876 ATGTCATTGAGTCCTCCTAGAGAGAGAAACAATGGTCAACCCAGGACCAACCAACTCTACTGGTGCTTCCAGTGCAACCGCATGGTCCGTATTGAATCCTCAAACCCCTCCGAGATCATCTGCCCTCGTTGCTTTGGCCAGTTCATCTGCGAAATCAACATGCCAAGGCCAAGACTCTTTGTAGATTTCACCACCCATGATCCTTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGTTGGACACACCCATCCGCCGCATCAGCCCCGACGCCCAAACCTCAGACGTCCCCATACATCCCAGAATGCGCCGTGGTTCTGACCCAACCCAACCCGAACCCGAGATCCAACATCAACCTCGGACATGGATCATCTATCATCCTTCCAACGAGTTCATCACACGTGGACGTGGACGGAGTCCCATCCCACGTGGCGTGGATGCAAGAGACTACTTTCTCGGGCCGGGTCTTAACGAACTTATCGAGCATTTGACGGAGAATGACCGGCAGGGTCCGGCGCCGGCGCCGGAGAGAGCTATAGAGGAGATTCCGACGGTGAAAATAGGGAGCAGTCACCTGAAGGAGAATTCTGAATGCCCAGTTTGTCGGGAAGAGTTTGAAGTTGGTGAAGAAGCGAGGGAACTGCCATGCAAGCATATATATCATTCTGATTGCATTGTTCCTTGGCTTAGGCTTCATAATTCTTGCCCCGTTTGTCGCCACCAGTTACCAGTCTCATCTTCTTCTTCTTCTTCCGACGAGGATGGTGGTGGAGGTGGTAGGGTTCGGAGGTGCTTGAGGTGGACGCGGCTTTCTTCTCTTTGGCCTTTCCATGGAAGGTATCAGCGGGTTCACCCTCAACGGGACAATGTTGATGCTTCTTCTTCTTCTTCTTCCAGGGGCGGCACTCTTGCTGCATTCTTTAAGCCATCCAATGGTTTACTTCAGTTCCAGGTTCAAGTGCTGGTTAGGATTCTGTGTGATCGCAGAAGACAAGTGTCGTGGACAAGAGAATGTGTTTTGCAAGAGTAA 1035 0.5188 MSLSPPRERNNGQPRTNQLYWCFQCNRMVRIESSNPSEIICPRCFGQFICEINMPRPRLFVDFTTHDPSPEARLLEALSLMLDTPIRRISPDAQTSDVPIHPRMRRGSDPTQPEPEIQHQPRTWIIYHPSNEFITRGRGRSPIPRGVDARDYFLGPGLNELIEHLTENDRQGPAPAPERAIEEIPTVKIGSSHLKENSECPVCREEFEVGEEARELPCKHIYHSDCIVPWLRLHNSCPVCRHQLPVSSSSSSSDEDGGGGGRVRRCLRWTRLSSLWPFHGRYQRVHPQRDNVDASSSSSSRGGTLAAFFKPSNGLLQFQVQVLVRILCDRRRQVSWTRECVLQE* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01876 344 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Rops10g01876 344 SMART ring_2 200 240 IPR001841 -
Rops10g01876 344 MobiDBLite consensus disorder prediction 91 117 - -
Rops10g01876 344 CDD RING-H2_RNF126-like 199 241 - -
Rops10g01876 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 247 IPR013083 -
Rops10g01876 344 Pfam Ring finger domain 199 241 IPR001841 -
Rops10g01876 344 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Rops10g01876 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 245 - -
Rops10g01876 344 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
Rops10g01876 344 SUPERFAMILY RING/U-box 180 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01876 Rops-Chr10 34775465 34777381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01876 172 290 C3H Transcription Factor Family AT1G68180 45.833 3.44e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01876 K11982 - gmx:100787399 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01876 10 34775465 34777381 Rops10g01876 10 34775465 34777381 ECH